Hb_000181_400

Information

Type -
Description -
Location Contig181: 363494-369021
Sequence    

Annotation

kegg
ID rcu:RCOM_0507780
description ubiquitin conjugating enzyme, putative (EC:6.3.2.19)
nr
ID XP_012084958.1
description PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
swissprot
ID Q9LUQ5
description Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1
trembl
ID A0A067JSX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20991 PE=4 SV=1
Gene Ontology
ID GO:0016874
description probable ubiquitin-conjugating enzyme e2 25 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17554: 363675-366360 , PASA_asmbl_17555: 365593-366011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_400 0.0 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
2 Hb_004324_130 0.0463043034 - - polypyrimidine tract binding protein, putative [Ricinus communis]
3 Hb_000907_110 0.0522088578 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
4 Hb_003294_070 0.055358396 - - hypothetical protein RCOM_1714550 [Ricinus communis]
5 Hb_007416_120 0.0615030064 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
6 Hb_000111_290 0.0631811214 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
7 Hb_001876_050 0.0662658698 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
8 Hb_002110_190 0.0665363277 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
9 Hb_006831_140 0.0670594656 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
10 Hb_000003_320 0.0685619222 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
11 Hb_000556_120 0.0711666988 - - Spastin, putative [Ricinus communis]
12 Hb_033642_090 0.072337551 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001671_100 0.073768525 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
14 Hb_000130_410 0.0740359348 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
15 Hb_002078_350 0.0742717921 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
16 Hb_002456_010 0.0758651955 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
17 Hb_004567_090 0.0769556831 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
18 Hb_002026_210 0.0773551162 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
19 Hb_001500_140 0.0776976538 - - pelota, putative [Ricinus communis]
20 Hb_001178_070 0.0779895564 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_400 Hb_000181_400 Hb_004324_130 Hb_004324_130 Hb_000181_400--Hb_004324_130 Hb_000907_110 Hb_000907_110 Hb_000181_400--Hb_000907_110 Hb_003294_070 Hb_003294_070 Hb_000181_400--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_000181_400--Hb_007416_120 Hb_000111_290 Hb_000111_290 Hb_000181_400--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_000181_400--Hb_001876_050 Hb_004324_130--Hb_000111_290 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_033642_090 Hb_033642_090 Hb_000907_110--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_000907_110--Hb_001357_250 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_009079_030 Hb_009079_030 Hb_003294_070--Hb_009079_030 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_001671_100 Hb_001671_100 Hb_007416_120--Hb_001671_100 Hb_007416_120--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_007416_120--Hb_001999_310 Hb_007416_120--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_000111_290--Hb_001999_310 Hb_001876_050--Hb_001671_100 Hb_001876_050--Hb_001999_310 Hb_001876_050--Hb_006831_140 Hb_001876_050--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.08364 6.91395 3.94056 7.13728 6.76684 6.86224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.22308 7.78481 6.12936 9.98459 5.67276

CAGE analysis