Hb_000182_040

Information

Type transcription factor
Description TF Family: SNF2
Location Contig182: 188910-216509
Sequence    

Annotation

kegg
ID rcu:RCOM_1189750
description ATP binding protein, putative (EC:2.7.11.1)
nr
ID XP_012079819.1
description PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
swissprot
ID Q8W103
description Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana GN=CHR24 PE=2 SV=1
trembl
ID A0A067K8W3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15353 PE=4 SV=1
Gene Ontology
ID GO:0005524
description protein chromatin remodeling 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17713: 173660-215616 , PASA_asmbl_17714: 215396-216113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000182_040 0.0 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
2 Hb_133702_030 0.0604055908 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
3 Hb_002217_030 0.0685438988 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
4 Hb_007657_020 0.0707987788 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
5 Hb_000089_120 0.0720803497 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000120_280 0.0730122095 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
7 Hb_000398_080 0.0752627392 - - tip120, putative [Ricinus communis]
8 Hb_028872_090 0.0771586541 - - PREDICTED: urease [Jatropha curcas]
9 Hb_000261_240 0.0805110343 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
10 Hb_002686_040 0.0836817489 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
11 Hb_004267_040 0.0856969064 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
12 Hb_002805_190 0.0857334865 - - spliceosome associated protein, putative [Ricinus communis]
13 Hb_140049_080 0.0861304338 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
14 Hb_003464_080 0.0864278181 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
15 Hb_001235_140 0.0870529708 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
16 Hb_000130_020 0.0879160856 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
17 Hb_002681_090 0.087987696 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
18 Hb_000603_030 0.088202157 - - Ribonuclease III, putative [Ricinus communis]
19 Hb_003363_080 0.088587957 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
20 Hb_001488_200 0.0900032024 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000182_040 Hb_000182_040 Hb_133702_030 Hb_133702_030 Hb_000182_040--Hb_133702_030 Hb_002217_030 Hb_002217_030 Hb_000182_040--Hb_002217_030 Hb_007657_020 Hb_007657_020 Hb_000182_040--Hb_007657_020 Hb_000089_120 Hb_000089_120 Hb_000182_040--Hb_000089_120 Hb_000120_280 Hb_000120_280 Hb_000182_040--Hb_000120_280 Hb_000398_080 Hb_000398_080 Hb_000182_040--Hb_000398_080 Hb_001733_030 Hb_001733_030 Hb_133702_030--Hb_001733_030 Hb_001454_370 Hb_001454_370 Hb_133702_030--Hb_001454_370 Hb_133702_030--Hb_000120_280 Hb_133702_030--Hb_007657_020 Hb_000603_030 Hb_000603_030 Hb_133702_030--Hb_000603_030 Hb_003464_080 Hb_003464_080 Hb_002217_030--Hb_003464_080 Hb_000200_120 Hb_000200_120 Hb_002217_030--Hb_000200_120 Hb_001232_010 Hb_001232_010 Hb_002217_030--Hb_001232_010 Hb_001860_030 Hb_001860_030 Hb_002217_030--Hb_001860_030 Hb_001235_140 Hb_001235_140 Hb_002217_030--Hb_001235_140 Hb_007657_020--Hb_000398_080 Hb_002681_090 Hb_002681_090 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_002311_290 Hb_002311_290 Hb_007657_020--Hb_002311_290 Hb_007657_020--Hb_000603_030 Hb_007657_020--Hb_000089_120 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_000089_120--Hb_000261_240 Hb_005588_090 Hb_005588_090 Hb_000089_120--Hb_005588_090 Hb_002784_020 Hb_002784_020 Hb_000089_120--Hb_002784_020 Hb_000089_120--Hb_000398_080 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_000120_280--Hb_002681_090 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000398_080--Hb_000011_100 Hb_000398_080--Hb_000603_030 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61071 2.44275 2.55763 2.21193 2.39521 2.63813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58581 1.21824 1.63279 3.54863 1.292

CAGE analysis