Hb_000183_070

Information

Type -
Description -
Location Contig183: 97537-104407
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000183_070 0.0 - - -
2 Hb_005714_040 0.063721873 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001437_300 0.0926288135 - - -
4 Hb_005015_010 0.0940961287 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
5 Hb_006501_150 0.0958889035 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006452_190 0.1013688415 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
7 Hb_005389_140 0.1030793993 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
8 Hb_001514_020 0.1042599852 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
9 Hb_143766_090 0.1054815521 - - 60S ribosomal protein L31B [Hevea brasiliensis]
10 Hb_000188_190 0.1134355253 - - -
11 Hb_004374_010 0.1150644059 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
12 Hb_004813_010 0.1156044407 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000977_140 0.1179174003 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
14 Hb_033080_010 0.1199557355 - - -
15 Hb_004096_170 0.121132606 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
16 Hb_000590_090 0.121564019 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_000015_010 0.1230548228 - - -
18 Hb_007017_060 0.123573895 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
19 Hb_000847_070 0.1248406103 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
20 Hb_002400_390 0.1263905218 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]

Gene co-expression network

sample Hb_000183_070 Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_000183_070--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_005015_010 Hb_005015_010 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_005714_040--Hb_005389_140 Hb_005714_040--Hb_005015_010 Hb_000590_090 Hb_000590_090 Hb_005714_040--Hb_000590_090 Hb_005714_040--Hb_006452_190 Hb_000188_190 Hb_000188_190 Hb_005714_040--Hb_000188_190 Hb_004374_010 Hb_004374_010 Hb_001437_300--Hb_004374_010 Hb_017098_030 Hb_017098_030 Hb_001437_300--Hb_017098_030 Hb_001437_300--Hb_006501_150 Hb_007992_030 Hb_007992_030 Hb_001437_300--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_001437_300--Hb_001514_020 Hb_005015_010--Hb_000188_190 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_005015_010--Hb_004374_010 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_006501_150--Hb_001514_020 Hb_005333_040 Hb_005333_040 Hb_006501_150--Hb_005333_040 Hb_004502_030 Hb_004502_030 Hb_006501_150--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006501_150--Hb_033080_010 Hb_006452_190--Hb_001437_300 Hb_005271_070 Hb_005271_070 Hb_006452_190--Hb_005271_070 Hb_006452_190--Hb_005015_010 Hb_011537_040 Hb_011537_040 Hb_006452_190--Hb_011537_040 Hb_005389_140--Hb_000590_090 Hb_000062_230 Hb_000062_230 Hb_005389_140--Hb_000062_230 Hb_004813_010 Hb_004813_010 Hb_005389_140--Hb_004813_010 Hb_005389_140--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.8545 9.88152 5.17229 1.38853 49.6596 24.3754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6566 31.106 9.89781 6.80213 3.50243

CAGE analysis