Hb_000183_090

Information

Type -
Description -
Location Contig183: 138407-148605
Sequence    

Annotation

kegg
ID rcu:RCOM_0798500
description hypothetical protein
nr
ID XP_012077332.1
description PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
swissprot
ID O82804
description Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1
trembl
ID A0A067KDC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07703 PE=4 SV=1
Gene Ontology
ID GO:0044707
description protein early flowering 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17857: 138163-148651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000183_090 0.0 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
2 Hb_000173_280 0.0832382005 - - Speckle-type POZ protein, putative [Ricinus communis]
3 Hb_000347_450 0.0873509088 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
4 Hb_001221_430 0.0912247819 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
5 Hb_050847_050 0.0977925397 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
6 Hb_002811_100 0.1003106442 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
7 Hb_023771_010 0.1027660844 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
8 Hb_000684_040 0.1042027408 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
9 Hb_003465_030 0.1059460503 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000490_060 0.1078679644 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
11 Hb_007257_060 0.1116173062 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
12 Hb_005588_060 0.1132732604 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
13 Hb_007382_120 0.1138234411 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
14 Hb_011224_160 0.1139027537 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
15 Hb_003776_060 0.1153134257 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
16 Hb_010775_040 0.1153856066 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
17 Hb_001671_100 0.1157932858 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
18 Hb_001723_020 0.1159998884 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
19 Hb_002982_020 0.1166982752 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
20 Hb_002456_010 0.1167656028 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000183_090 Hb_000183_090 Hb_000173_280 Hb_000173_280 Hb_000183_090--Hb_000173_280 Hb_000347_450 Hb_000347_450 Hb_000183_090--Hb_000347_450 Hb_001221_430 Hb_001221_430 Hb_000183_090--Hb_001221_430 Hb_050847_050 Hb_050847_050 Hb_000183_090--Hb_050847_050 Hb_002811_100 Hb_002811_100 Hb_000183_090--Hb_002811_100 Hb_023771_010 Hb_023771_010 Hb_000183_090--Hb_023771_010 Hb_000173_280--Hb_001221_430 Hb_001359_050 Hb_001359_050 Hb_000173_280--Hb_001359_050 Hb_164390_010 Hb_164390_010 Hb_000173_280--Hb_164390_010 Hb_006570_080 Hb_006570_080 Hb_000173_280--Hb_006570_080 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_005588_060 Hb_005588_060 Hb_000173_280--Hb_005588_060 Hb_011224_160 Hb_011224_160 Hb_000347_450--Hb_011224_160 Hb_000088_270 Hb_000088_270 Hb_000347_450--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_002456_010 Hb_002456_010 Hb_001221_430--Hb_002456_010 Hb_017387_010 Hb_017387_010 Hb_001221_430--Hb_017387_010 Hb_001221_430--Hb_001359_050 Hb_000107_660 Hb_000107_660 Hb_001221_430--Hb_000107_660 Hb_000460_080 Hb_000460_080 Hb_001221_430--Hb_000460_080 Hb_006588_060 Hb_006588_060 Hb_050847_050--Hb_006588_060 Hb_000000_230 Hb_000000_230 Hb_050847_050--Hb_000000_230 Hb_002471_090 Hb_002471_090 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_000510_340 Hb_000510_340 Hb_050847_050--Hb_000510_340 Hb_007257_060 Hb_007257_060 Hb_050847_050--Hb_007257_060 Hb_004880_150 Hb_004880_150 Hb_002811_100--Hb_004880_150 Hb_003776_060 Hb_003776_060 Hb_002811_100--Hb_003776_060 Hb_023001_040 Hb_023001_040 Hb_002811_100--Hb_023001_040 Hb_002811_100--Hb_010775_040 Hb_000363_190 Hb_000363_190 Hb_002811_100--Hb_000363_190 Hb_002357_060 Hb_002357_060 Hb_002811_100--Hb_002357_060 Hb_023771_010--Hb_010775_040 Hb_000049_210 Hb_000049_210 Hb_023771_010--Hb_000049_210 Hb_000173_470 Hb_000173_470 Hb_023771_010--Hb_000173_470 Hb_019863_070 Hb_019863_070 Hb_023771_010--Hb_019863_070 Hb_011218_090 Hb_011218_090 Hb_023771_010--Hb_011218_090 Hb_023771_010--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6954 9.19234 6.70841 7.42256 6.54336 3.06996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.67596 10.8444 5.66566 11.3379 6.21305

CAGE analysis