Hb_000184_050

Information

Type -
Description -
Location Contig184: 68182-74939
Sequence    

Annotation

kegg
ID rcu:RCOM_0691110
description NOI, putative
nr
ID XP_002532206.1
description NOI, putative [Ricinus communis]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID B9T1T7
description NOI, putative OS=Ricinus communis GN=RCOM_0691110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17979: 68177-74918 , PASA_asmbl_17980: 72721-73133 , PASA_asmbl_17982: 69016-69117
cDNA
(Sanger)
(ID:Location)		 003_D14.ab1: 68177-74917 , 005_E22.ab1: 68177-74918 , 017_O03.ab1: 68177-74907 , 027_D05.ab1: 68177-74883 , 027_O06.ab1: 68182-74909 , 032_L16.ab1: 68182-74909 , 043_I04.ab1: 68177-74916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_050 0.0 - - NOI, putative [Ricinus communis]
2 Hb_130291_010 0.0763829676 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
3 Hb_000815_260 0.0765530603 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
4 Hb_003683_040 0.077309139 - - unnamed protein product [Coffea canephora]
5 Hb_008847_020 0.0796979561 - - 40S ribosomal protein S17C [Hevea brasiliensis]
6 Hb_000196_050 0.0859401918 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
7 Hb_010883_150 0.0964011156 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
8 Hb_000199_070 0.0979701846 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002701_050 0.0982721358 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
10 Hb_009554_010 0.1025944789 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
11 Hb_000580_080 0.1044285781 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
12 Hb_000061_330 0.1116797453 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
13 Hb_001584_070 0.1118315367 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004005_010 0.1131040079 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
15 Hb_004007_100 0.1133578346 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
16 Hb_000212_470 0.1179303519 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
17 Hb_098315_120 0.1182247492 - - -
18 Hb_001754_010 0.1192794799 - - translationally controlled tumor protein [Hevea brasiliensis]
19 Hb_003398_120 0.1197353915 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_004109_020 0.1215784943 - - 60S ribosomal protein L18aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_000184_050 Hb_000184_050 Hb_130291_010 Hb_130291_010 Hb_000184_050--Hb_130291_010 Hb_000815_260 Hb_000815_260 Hb_000184_050--Hb_000815_260 Hb_003683_040 Hb_003683_040 Hb_000184_050--Hb_003683_040 Hb_008847_020 Hb_008847_020 Hb_000184_050--Hb_008847_020 Hb_000196_050 Hb_000196_050 Hb_000184_050--Hb_000196_050 Hb_010883_150 Hb_010883_150 Hb_000184_050--Hb_010883_150 Hb_012265_010 Hb_012265_010 Hb_130291_010--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_000975_110 Hb_000975_110 Hb_130291_010--Hb_000975_110 Hb_000815_260--Hb_130291_010 Hb_004724_160 Hb_004724_160 Hb_000815_260--Hb_004724_160 Hb_002701_050 Hb_002701_050 Hb_000815_260--Hb_002701_050 Hb_000815_260--Hb_000975_110 Hb_000815_260--Hb_001433_050 Hb_003683_040--Hb_000196_050 Hb_154826_010 Hb_154826_010 Hb_003683_040--Hb_154826_010 Hb_003683_040--Hb_000815_260 Hb_009554_010 Hb_009554_010 Hb_003683_040--Hb_009554_010 Hb_003683_040--Hb_130291_010 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_008847_020--Hb_010883_150 Hb_008847_020--Hb_000199_070 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_000526_150 Hb_000526_150 Hb_008847_020--Hb_000526_150 Hb_002316_060 Hb_002316_060 Hb_000196_050--Hb_002316_060 Hb_000196_050--Hb_009554_010 Hb_000196_050--Hb_000815_260 Hb_031042_010 Hb_031042_010 Hb_000196_050--Hb_031042_010 Hb_001584_070 Hb_001584_070 Hb_010883_150--Hb_001584_070 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_002311_320 Hb_002311_320 Hb_010883_150--Hb_002311_320 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
270.461 156.358 34.8498 163.237 239.722 534.599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
668.131 923.948 330.249 272.159 30.688

CAGE analysis