Hb_000184_120

Information

Type -
Description -
Location Contig184: 128047-129873
Sequence    

Annotation

kegg
ID cmo:103502279
description uncharacterized LOC103502279
nr
ID KDP29957.1
description hypothetical protein JCGZ_18526 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_120 0.0 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
2 Hb_077562_040 0.1010182444 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
3 Hb_002200_120 0.1061125596 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000563_530 0.1114534294 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
5 Hb_033448_010 0.1134869779 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
6 Hb_004025_030 0.1267263116 - - -
7 Hb_000369_090 0.1414533256 - - -
8 Hb_000366_100 0.1435444375 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
9 Hb_001488_110 0.14542429 - - -
10 Hb_023675_010 0.1471786572 - - -
11 Hb_073973_110 0.162751649 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
12 Hb_004968_060 0.1653933637 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000603_220 0.1658478263 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
14 Hb_000831_060 0.169686178 - - 17.5 kd heat shock family protein [Populus trichocarpa]
15 Hb_027445_060 0.1699107579 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
16 Hb_000189_530 0.1720016595 - - 40S ribosomal protein S24B [Hevea brasiliensis]
17 Hb_017711_010 0.1731124649 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
18 Hb_000330_170 0.1741606385 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
19 Hb_004223_200 0.1750858628 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
20 Hb_011016_090 0.1780341292 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_000184_120 Hb_000184_120 Hb_077562_040 Hb_077562_040 Hb_000184_120--Hb_077562_040 Hb_002200_120 Hb_002200_120 Hb_000184_120--Hb_002200_120 Hb_000563_530 Hb_000563_530 Hb_000184_120--Hb_000563_530 Hb_033448_010 Hb_033448_010 Hb_000184_120--Hb_033448_010 Hb_004025_030 Hb_004025_030 Hb_000184_120--Hb_004025_030 Hb_000369_090 Hb_000369_090 Hb_000184_120--Hb_000369_090 Hb_023675_010 Hb_023675_010 Hb_077562_040--Hb_023675_010 Hb_077562_040--Hb_004025_030 Hb_077562_040--Hb_000563_530 Hb_000366_100 Hb_000366_100 Hb_077562_040--Hb_000366_100 Hb_001488_110 Hb_001488_110 Hb_077562_040--Hb_001488_110 Hb_000330_170 Hb_000330_170 Hb_002200_120--Hb_000330_170 Hb_002200_120--Hb_000563_530 Hb_002200_120--Hb_033448_010 Hb_002200_120--Hb_000369_090 Hb_000061_160 Hb_000061_160 Hb_002200_120--Hb_000061_160 Hb_000563_530--Hb_033448_010 Hb_000563_530--Hb_000369_090 Hb_000563_530--Hb_000366_100 Hb_033448_010--Hb_000369_090 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_033448_010--Hb_000366_100 Hb_004025_030--Hb_023675_010 Hb_004025_030--Hb_000563_530 Hb_004375_060 Hb_004375_060 Hb_004025_030--Hb_004375_060 Hb_027445_060 Hb_027445_060 Hb_004025_030--Hb_027445_060 Hb_000369_090--Hb_000330_170 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27538 0.498846 0.191559 0.291208 5.61582 11.563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.01259 10.1458 1.94923 0.452714 0

CAGE analysis