Hb_000184_130

Information

Type -
Description -
Location Contig184: 172193-191332
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16780g
description POPTRDRAFT_664908; hypothetical protein
nr
ID XP_012081519.1
description PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18527 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cell wall protein awa1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17991: 172772-191229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_130 0.0 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
2 Hb_000370_030 0.0564988509 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
3 Hb_000915_050 0.057163255 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004204_020 0.0689738363 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
5 Hb_003362_040 0.0700407392 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
6 Hb_002039_010 0.0736365913 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_004734_060 0.0737616251 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
8 Hb_000300_280 0.0738590774 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
9 Hb_000209_020 0.0751802388 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
10 Hb_004934_090 0.0756311785 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
11 Hb_004055_040 0.0788793201 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
12 Hb_004452_100 0.079227689 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
13 Hb_000803_190 0.0797515364 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_033152_080 0.0797757678 - - RNA-binding protein Nova-1, putative [Ricinus communis]
15 Hb_000836_360 0.0804768641 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
16 Hb_000390_060 0.0805200526 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
17 Hb_001019_170 0.0807494821 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
18 Hb_001366_040 0.0808528384 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
19 Hb_001943_010 0.0830026385 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_002798_040 0.0833200203 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000184_130 Hb_000184_130 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_004204_020 Hb_004204_020 Hb_000184_130--Hb_004204_020 Hb_003362_040 Hb_003362_040 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010 Hb_004734_060 Hb_004734_060 Hb_000184_130--Hb_004734_060 Hb_000300_280 Hb_000300_280 Hb_000370_030--Hb_000300_280 Hb_000457_060 Hb_000457_060 Hb_000370_030--Hb_000457_060 Hb_004310_060 Hb_004310_060 Hb_000370_030--Hb_004310_060 Hb_000568_040 Hb_000568_040 Hb_000370_030--Hb_000568_040 Hb_000316_030 Hb_000316_030 Hb_000370_030--Hb_000316_030 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_000915_050--Hb_004204_020 Hb_000703_220 Hb_000703_220 Hb_004204_020--Hb_000703_220 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_004204_020--Hb_002039_010 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_002890_340 Hb_002890_340 Hb_002039_010--Hb_002890_340 Hb_004452_100 Hb_004452_100 Hb_002039_010--Hb_004452_100 Hb_000152_820 Hb_000152_820 Hb_002039_010--Hb_000152_820 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020 Hb_033152_080 Hb_033152_080 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.0843 27.9887 8.62796 14.03 40.2711 72.0701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0156 24.5648 35.5715 24.8611 11.7631

CAGE analysis