Hb_000184_140

Information

Type -
Description -
Location Contig184: 192302-192724
Sequence    

Annotation

kegg
ID rcu:RCOM_0691190
description hypothetical protein
nr
ID XP_002532214.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1U5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0691190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_076233_010 0.1823229526 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000646_020 0.2177903688 - - putative gag protein [Coffea canephora]
4 Hb_002400_370 0.2183426139 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
5 Hb_002498_210 0.2270719006 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
6 Hb_007545_200 0.3058426831 - - Pectinesterase-3 precursor, putative [Ricinus communis]
7 Hb_020805_160 0.305912204 - - -
8 Hb_000663_030 0.3108141461 - - -
9 Hb_116360_010 0.3113655514 - - -
10 Hb_001114_030 0.3125367119 - - Brown planthopper resistance protein [Oryza sativa Indica Group]
11 Hb_123560_030 0.3135231937 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_119600_020 0.3151774644 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_001946_370 0.3196847447 - - conserved hypothetical protein [Ricinus communis]
14 Hb_052802_010 0.3217694632 - - kinase, putative [Ricinus communis]
15 Hb_026620_010 0.3312463436 - - -
16 Hb_003902_080 0.3331589199 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
17 Hb_009102_020 0.3372582055 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
18 Hb_009193_080 0.3423996635 - - -
19 Hb_000624_020 0.3448690191 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
20 Hb_143933_010 0.345012746 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_000184_140 Hb_000184_140 Hb_076233_010 Hb_076233_010 Hb_000184_140--Hb_076233_010 Hb_000646_020 Hb_000646_020 Hb_000184_140--Hb_000646_020 Hb_002400_370 Hb_002400_370 Hb_000184_140--Hb_002400_370 Hb_002498_210 Hb_002498_210 Hb_000184_140--Hb_002498_210 Hb_007545_200 Hb_007545_200 Hb_000184_140--Hb_007545_200 Hb_020805_160 Hb_020805_160 Hb_000184_140--Hb_020805_160 Hb_076233_010--Hb_000646_020 Hb_026620_010 Hb_026620_010 Hb_076233_010--Hb_026620_010 Hb_119600_020 Hb_119600_020 Hb_076233_010--Hb_119600_020 Hb_076233_010--Hb_020805_160 Hb_076233_010--Hb_007545_200 Hb_000646_020--Hb_002498_210 Hb_001114_030 Hb_001114_030 Hb_000646_020--Hb_001114_030 Hb_001794_080 Hb_001794_080 Hb_000646_020--Hb_001794_080 Hb_000646_020--Hb_026620_010 Hb_002400_370--Hb_002498_210 Hb_004242_070 Hb_004242_070 Hb_002400_370--Hb_004242_070 Hb_083493_020 Hb_083493_020 Hb_002400_370--Hb_083493_020 Hb_116360_010 Hb_116360_010 Hb_002400_370--Hb_116360_010 Hb_000624_020 Hb_000624_020 Hb_002400_370--Hb_000624_020 Hb_002498_210--Hb_076233_010 Hb_002498_210--Hb_083493_020 Hb_002498_210--Hb_116360_010 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_007545_200--Hb_119600_020 Hb_052802_010 Hb_052802_010 Hb_007545_200--Hb_052802_010 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_007545_200--Hb_020805_160 Hb_001810_050 Hb_001810_050 Hb_007545_200--Hb_001810_050 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_071079_060 Hb_071079_060 Hb_020805_160--Hb_071079_060 Hb_020805_160--Hb_119600_020 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.227778 0.146294 0 0.341644 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis