Hb_000184_170

Information

Type -
Description -
Location Contig184: 201399-213888
Sequence    

Annotation

kegg
ID rcu:RCOM_1213430
description hypothetical protein
nr
ID XP_002524601.1
description hypothetical protein RCOM_1213430 [Ricinus communis]
swissprot
ID F4IV66
description Ribonuclease E/G-like protein, chloroplastic OS=Arabidopsis thaliana GN=RNE PE=1 SV=1
trembl
ID B9SF32
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1213430 PE=4 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease e g-like chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17996: 201608-201774 , PASA_asmbl_17997: 202578-208818 , PASA_asmbl_17998: 208819-213616 , PASA_asmbl_17999: 208979-213616 , PASA_asmbl_18000: 211891-213649 , PASA_asmbl_18001: 211850-213623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_170 0.0 - - hypothetical protein RCOM_1213430 [Ricinus communis]
2 Hb_003153_010 0.0718178752 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
3 Hb_000346_060 0.0743157381 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
4 Hb_001700_010 0.0750279883 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
5 Hb_008959_010 0.076518871 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022693_140 0.0773882533 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
7 Hb_001279_030 0.0780841312 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
8 Hb_000224_160 0.0793333196 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_002374_240 0.0794761623 - - nucellin, putative [Ricinus communis]
10 Hb_000181_240 0.0816331629 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
11 Hb_000039_150 0.0818132284 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
12 Hb_012022_150 0.0826848481 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
13 Hb_004108_160 0.0848136234 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
14 Hb_001584_200 0.0853749637 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
15 Hb_003513_010 0.0855401217 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
16 Hb_000137_040 0.0855658309 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
17 Hb_007657_010 0.0865926953 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001322_140 0.0881659482 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
19 Hb_000556_090 0.0890196279 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
20 Hb_000804_040 0.0898300218 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000184_170 Hb_000184_170 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_001700_010 Hb_001700_010 Hb_000184_170--Hb_001700_010 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_022693_140 Hb_022693_140 Hb_000184_170--Hb_022693_140 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030 Hb_004108_160 Hb_004108_160 Hb_003153_010--Hb_004108_160 Hb_000556_090 Hb_000556_090 Hb_003153_010--Hb_000556_090 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_008421_020 Hb_008421_020 Hb_003153_010--Hb_008421_020 Hb_007657_010 Hb_007657_010 Hb_000346_060--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_000346_060--Hb_000343_250 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_004097_070 Hb_004097_070 Hb_000346_060--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000346_060--Hb_002732_040 Hb_004963_030 Hb_004963_030 Hb_000346_060--Hb_004963_030 Hb_000103_480 Hb_000103_480 Hb_001700_010--Hb_000103_480 Hb_000869_020 Hb_000869_020 Hb_001700_010--Hb_000869_020 Hb_008165_060 Hb_008165_060 Hb_001700_010--Hb_008165_060 Hb_001322_140 Hb_001322_140 Hb_001700_010--Hb_001322_140 Hb_000205_190 Hb_000205_190 Hb_001700_010--Hb_000205_190 Hb_000039_150 Hb_000039_150 Hb_008959_010--Hb_000039_150 Hb_008959_010--Hb_004108_160 Hb_002263_020 Hb_002263_020 Hb_008959_010--Hb_002263_020 Hb_008959_010--Hb_002769_030 Hb_001304_110 Hb_001304_110 Hb_008959_010--Hb_001304_110 Hb_011228_010 Hb_011228_010 Hb_008959_010--Hb_011228_010 Hb_012022_150 Hb_012022_150 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_001279_030--Hb_011228_010 Hb_005291_050 Hb_005291_050 Hb_001279_030--Hb_005291_050 Hb_006501_090 Hb_006501_090 Hb_001279_030--Hb_006501_090 Hb_000181_240 Hb_000181_240 Hb_001279_030--Hb_000181_240 Hb_001279_030--Hb_000039_150 Hb_015807_050 Hb_015807_050 Hb_001279_030--Hb_015807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.49051 3.04969 6.30914 4.4659 4.69945 6.22045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73808 4.88031 6.0479 3.31762 8.27401

CAGE analysis