Hb_000184_180

Information

Type -
Description -
Location Contig184: 218286-218756
Sequence    

Annotation

kegg
ID fve:101313019
description RING finger protein 150-like
nr
ID AAP46154.1
description putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
swissprot
ID Q9ZU51
description Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2
trembl
ID Q6XNP9
description Putative C3HC4-type RING zinc finger protein OS=Hevea brasiliensis GN=RGZF1 PE=2 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin-protein ligase xerico

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18002: 217664-219523 , PASA_asmbl_18003: 217980-219523 , PASA_asmbl_18004: 217980-219124 , PASA_asmbl_18005: 217980-219524 , PASA_asmbl_18006: 217980-219523
cDNA
(Sanger)
(ID:Location)		 001_K02.ab1: 218262-219514 , 001_K16.ab1: 218240-219524 , 001_P02.ab1: 218277-219524 , 002_P04.ab1: 218313-219523 , 004_K14.ab1: 218277-219523 , 004_M02.ab1: 218267-219523 , 004_M05.ab1: 218277-219523 , 004_N06.ab1: 218314-219523 , 005_F08.ab1: 218262-219523 , 006_A15.ab1: 218373-219524 , 006_K15.ab1: 218277-219522 , 007_K22.ab1: 218289-219524 , 008_A20.ab1: 218379-219523 , 008_A22.ab1: 218313-219523 , 008_P05.ab1: 218365-219523 , 009_G19.ab1: 218227-219523 , 009_N05.ab1: 218533-219514 , 011_K13.ab1: 218326-219523 , 012_L10.ab1: 218336-219524 , 014_G23.ab1: 218341-219524 , 015_H13.ab1: 218115-218535 , 015_P03.ab1: 218277-219524 , 016_A22.ab1: 218334-219524 , 018_H13.ab1: 218322-219524 , 018_K03.ab1: 218370-219524 , 019_F16.ab1: 218334-219523 , 019_G22.ab1: 218266-219524 , 019_K21.ab1: 218316-219523 , 019_M21.ab1: 218334-219522 , 020_D13.ab1: 218265-219523 , 020_L19.ab1: 218312-219523 , 021_G18.ab1: 218336-219523 , 021_I17.ab1: 218280-219524 , 025_F17.ab1: 218259-219523 , 026_G23.ab1: 218333-219539 , 026_N15.ab1: 218549-219518 , 026_O22.ab1: 218407-219524 , 026_P02.ab1: 218311-219523 , 027_L21.ab1: 218279-219523 , 028_M15.ab1: 218546-219524 , 029_A21.ab1: 218396-219523 , 029_E24.ab1: 218268-219523 , 030_G09.ab1: 218318-219523 , 030_N07.ab1: 218263-219523 , 031_B15.ab1: 218279-219524 , 032_K07.ab1: 218467-219524 , 032_O11.ab1: 218292-219524 , 033_D02.ab1: 218544-219346 , 035_I02.ab1: 218277-219524 , 036_H05.ab1: 218241-219523 , 037_C13.ab1: 218281-219524 , 037_D23.ab1: 218259-219523 , 037_M15.ab1: 218284-219523 , 037_P03.ab1: 218265-219523 , 038_I01.ab1: 218160-219524 , 038_K22.ab1: 218292-219522 , 038_P17.ab1: 218277-219524 , 039_D03.ab1: 218781-219440 , 040_M15.ab1: 218278-219523 , 040_M20.ab1: 218314-219526 , 041_E23.ab1: 218299-219523 , 042_D07.ab1: 218332-219524 , 044_K19.ab1: 218316-219523 , 046_A03.ab1: 218262-219523 , 047_F16.ab1: 218313-219514 , 048_A21.ab1: 218313-219524 , 048_O01.ab1: 218265-219523 , 048_O19.ab1: 218294-219523 , 049_D16.ab1: 218325-219526 , 049_F12.ab1: 218336-219523 , 049_F19.ab1: 218388-219523 , 051_D12.ab1: 218337-219523 , 052_D14.ab1: 218277-219524 , 052_E18.ab1: 218277-219524 , 053_O09.ab1: 218550-219493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_180 0.0 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
2 Hb_006816_440 0.081145959 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_000052_010 0.0817584832 - - hypothetical protein M569_08416, partial [Genlisea aurea]
4 Hb_000444_030 0.0898334992 - - PREDICTED: expansin-A20 [Jatropha curcas]
5 Hb_001741_080 0.1020112836 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
6 Hb_115919_020 0.1027113175 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
7 Hb_007747_130 0.1028435829 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
8 Hb_000284_010 0.1060999454 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_149683_010 0.1066098804 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
10 Hb_005016_130 0.1098002474 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
11 Hb_000526_020 0.112478985 - - thioredoxin-like family protein [Hevea brasiliensis]
12 Hb_000005_030 0.1186100014 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
13 Hb_001266_050 0.1193591825 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
14 Hb_000580_170 0.1199439466 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
15 Hb_012799_060 0.1202915019 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
16 Hb_003540_230 0.1239095765 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
17 Hb_043061_010 0.1285956735 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
18 Hb_000078_030 0.1297716354 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002235_230 0.1304116856 - - latex abundant protein 1 [Hevea brasiliensis]
20 Hb_004410_010 0.130577014 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000184_180 Hb_000184_180 Hb_006816_440 Hb_006816_440 Hb_000184_180--Hb_006816_440 Hb_000052_010 Hb_000052_010 Hb_000184_180--Hb_000052_010 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130 Hb_149683_010 Hb_149683_010 Hb_006816_440--Hb_149683_010 Hb_002235_230 Hb_002235_230 Hb_006816_440--Hb_002235_230 Hb_006816_440--Hb_000444_030 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_000052_010--Hb_149683_010 Hb_004055_060 Hb_004055_060 Hb_000052_010--Hb_004055_060 Hb_000444_030--Hb_001741_080 Hb_001514_180 Hb_001514_180 Hb_000444_030--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_005016_130 Hb_005016_130 Hb_001741_080--Hb_005016_130 Hb_001741_080--Hb_000041_070 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_000284_010 Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_005016_130 Hb_115919_020--Hb_000078_030 Hb_000787_070 Hb_000787_070 Hb_115919_020--Hb_000787_070 Hb_000193_230 Hb_000193_230 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040 Hb_004410_010 Hb_004410_010 Hb_007747_130--Hb_004410_010 Hb_007747_130--Hb_115919_020 Hb_001252_140 Hb_001252_140 Hb_007747_130--Hb_001252_140 Hb_006469_060 Hb_006469_060 Hb_007747_130--Hb_006469_060 Hb_001621_180 Hb_001621_180 Hb_007747_130--Hb_001621_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5811.35 51.8354 18.5176 548.979 2790.48 5475.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12488.5 9550.61 4592.98 398.927 22.9807

CAGE analysis