Hb_000184_220

Information

Type -
Description -
Location Contig184: 262075-265042
Sequence    

Annotation

kegg
ID csv:101216086
description uncharacterized LOC101216086
nr
ID KDO50999.1
description hypothetical protein CISIN_1g0207781mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EAS1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0207781mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18010: 262607-264098 , PASA_asmbl_18011: 261838-264098 , PASA_asmbl_18012: 262187-262381 , PASA_asmbl_18014: 264141-264429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_220 0.0 - - hypothetical protein CISIN_1g0207781mg [Citrus sinensis]
2 Hb_002045_230 0.127432159 - - Ammonium transporter 2 [Theobroma cacao]
3 Hb_000352_140 0.1275321592 - - -
4 Hb_021409_090 0.1370541004 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
5 Hb_000364_210 0.138644598 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
6 Hb_005841_050 0.1446057224 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
7 Hb_000123_160 0.1479482824 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_146225_010 0.1525968872 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
9 Hb_002217_450 0.1535901878 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
10 Hb_003549_020 0.1549219699 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000676_240 0.1575068726 - - thioredoxin H-type 2 [Hevea brasiliensis]
12 Hb_000258_280 0.1585418223 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
13 Hb_000976_250 0.1596676519 - - -
14 Hb_003043_120 0.1599942262 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000106_090 0.1602154594 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
16 Hb_001863_400 0.1621295904 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
17 Hb_002320_060 0.1622106951 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
18 Hb_000236_460 0.1650923888 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
19 Hb_076626_010 0.166355448 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000096_060 0.1668770546 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000184_220 Hb_000184_220 Hb_002045_230 Hb_002045_230 Hb_000184_220--Hb_002045_230 Hb_000352_140 Hb_000352_140 Hb_000184_220--Hb_000352_140 Hb_021409_090 Hb_021409_090 Hb_000184_220--Hb_021409_090 Hb_000364_210 Hb_000364_210 Hb_000184_220--Hb_000364_210 Hb_005841_050 Hb_005841_050 Hb_000184_220--Hb_005841_050 Hb_000123_160 Hb_000123_160 Hb_000184_220--Hb_000123_160 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_000352_140--Hb_005841_050 Hb_011245_020 Hb_011245_020 Hb_000352_140--Hb_011245_020 Hb_000599_090 Hb_000599_090 Hb_000352_140--Hb_000599_090 Hb_000106_090 Hb_000106_090 Hb_000352_140--Hb_000106_090 Hb_002217_450 Hb_002217_450 Hb_021409_090--Hb_002217_450 Hb_187083_010 Hb_187083_010 Hb_021409_090--Hb_187083_010 Hb_000199_070 Hb_000199_070 Hb_021409_090--Hb_000199_070 Hb_000236_460 Hb_000236_460 Hb_021409_090--Hb_000236_460 Hb_011161_050 Hb_011161_050 Hb_021409_090--Hb_011161_050 Hb_003561_030 Hb_003561_030 Hb_021409_090--Hb_003561_030 Hb_001862_100 Hb_001862_100 Hb_000364_210--Hb_001862_100 Hb_002719_080 Hb_002719_080 Hb_000364_210--Hb_002719_080 Hb_000648_020 Hb_000648_020 Hb_000364_210--Hb_000648_020 Hb_003938_180 Hb_003938_180 Hb_000364_210--Hb_003938_180 Hb_002539_090 Hb_002539_090 Hb_000364_210--Hb_002539_090 Hb_003929_120 Hb_003929_120 Hb_000364_210--Hb_003929_120 Hb_005841_050--Hb_002217_450 Hb_146225_010 Hb_146225_010 Hb_005841_050--Hb_146225_010 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_005841_050--Hb_021409_090 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_000123_160--Hb_000976_250 Hb_000123_160--Hb_146225_010 Hb_000318_490 Hb_000318_490 Hb_000123_160--Hb_000318_490 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42588 0.0464681 0.812832 1.37311 1.69648 6.12619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.52864 18.6579 8.28758 1.94612 1.01099

CAGE analysis