Hb_000184_230

Information

Type transcription factor
Description TF Family: Orphans
Location Contig184: 266518-272054
Sequence    

Annotation

kegg
ID tcc:TCM_002458
description B-box type zinc finger protein with CCT domain isoform 1
nr
ID XP_012089608.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
swissprot
ID Q9SSE5
description Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1
trembl
ID A0A067JGL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01724 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18015: 266359-272758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_230 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
2 Hb_007218_070 0.1700586952 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000614_170 0.1720563699 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
4 Hb_007432_020 0.1815309942 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
5 Hb_000563_190 0.1825735056 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
6 Hb_005873_010 0.1839245987 - - cysteine desulfurylase, putative [Ricinus communis]
7 Hb_002217_230 0.1866027459 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
8 Hb_000015_030 0.1879007278 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
9 Hb_094437_060 0.1922678651 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
10 Hb_105602_010 0.1949270441 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
11 Hb_002151_050 0.2009473197 - - cytochrome P450, putative [Ricinus communis]
12 Hb_004931_100 0.2010155559 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
13 Hb_001332_040 0.2011876152 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
14 Hb_181600_010 0.2062456557 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
15 Hb_145084_010 0.208291059 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
16 Hb_004208_130 0.2095304972 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
17 Hb_002835_100 0.2138313653 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
18 Hb_001699_200 0.2145127876 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
19 Hb_005914_010 0.2170924062 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
20 Hb_001484_010 0.2213961102 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]

Gene co-expression network

sample Hb_000184_230 Hb_000184_230 Hb_007218_070 Hb_007218_070 Hb_000184_230--Hb_007218_070 Hb_000614_170 Hb_000614_170 Hb_000184_230--Hb_000614_170 Hb_007432_020 Hb_007432_020 Hb_000184_230--Hb_007432_020 Hb_000563_190 Hb_000563_190 Hb_000184_230--Hb_000563_190 Hb_005873_010 Hb_005873_010 Hb_000184_230--Hb_005873_010 Hb_002217_230 Hb_002217_230 Hb_000184_230--Hb_002217_230 Hb_094437_060 Hb_094437_060 Hb_007218_070--Hb_094437_060 Hb_001699_200 Hb_001699_200 Hb_007218_070--Hb_001699_200 Hb_007218_070--Hb_000614_170 Hb_000200_290 Hb_000200_290 Hb_007218_070--Hb_000200_290 Hb_002151_050 Hb_002151_050 Hb_007218_070--Hb_002151_050 Hb_000614_170--Hb_001699_200 Hb_001332_040 Hb_001332_040 Hb_000614_170--Hb_001332_040 Hb_000614_170--Hb_002217_230 Hb_017170_030 Hb_017170_030 Hb_000614_170--Hb_017170_030 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_004931_100 Hb_004931_100 Hb_007432_020--Hb_004931_100 Hb_004128_110 Hb_004128_110 Hb_007432_020--Hb_004128_110 Hb_000317_400 Hb_000317_400 Hb_007432_020--Hb_000317_400 Hb_000692_010 Hb_000692_010 Hb_007432_020--Hb_000692_010 Hb_105602_010 Hb_105602_010 Hb_007432_020--Hb_105602_010 Hb_007432_020--Hb_002217_230 Hb_001484_010 Hb_001484_010 Hb_000563_190--Hb_001484_010 Hb_000080_210 Hb_000080_210 Hb_000563_190--Hb_000080_210 Hb_003098_020 Hb_003098_020 Hb_000563_190--Hb_003098_020 Hb_001387_020 Hb_001387_020 Hb_000563_190--Hb_001387_020 Hb_000896_040 Hb_000896_040 Hb_000563_190--Hb_000896_040 Hb_007054_010 Hb_007054_010 Hb_000563_190--Hb_007054_010 Hb_005873_010--Hb_001332_040 Hb_005873_010--Hb_001699_200 Hb_005873_010--Hb_105602_010 Hb_005873_010--Hb_000614_170 Hb_000621_020 Hb_000621_020 Hb_005873_010--Hb_000621_020 Hb_001623_160 Hb_001623_160 Hb_005873_010--Hb_001623_160 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_001638_230 Hb_001638_230 Hb_002217_230--Hb_001638_230 Hb_002217_230--Hb_000896_040 Hb_002217_230--Hb_004931_100 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.930289 0.173556 2.33163 1.12873 0.406376 1.14127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66942 4.7069 4.6608 7.97226 0.644873

CAGE analysis