Hb_000185_030

Information

Type -
Description -
Location Contig185: 42622-43737
Sequence    

Annotation

kegg
ID rcu:RCOM_1509460
description hypothetical protein
nr
ID XP_012080003.1
description PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18101: 42406-60375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_030 0.0 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
2 Hb_000297_010 0.04890404 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
3 Hb_000710_060 0.0523136154 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
4 Hb_003761_010 0.0555983632 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_001633_210 0.0587865027 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
6 Hb_008725_230 0.0605896936 - - PREDICTED: CTP synthase [Jatropha curcas]
7 Hb_000840_250 0.0651497018 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
8 Hb_015934_040 0.0663131757 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
9 Hb_010128_080 0.0682109265 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
10 Hb_000189_560 0.0683291952 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
11 Hb_000049_210 0.0692519367 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
12 Hb_000331_550 0.0697040949 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
13 Hb_008770_030 0.0700190416 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
14 Hb_001205_240 0.0702235854 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
15 Hb_000556_160 0.0703180603 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
16 Hb_022115_020 0.0703822274 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
17 Hb_002078_350 0.070835847 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
18 Hb_006615_020 0.0727593121 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
19 Hb_000028_180 0.0734784968 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
20 Hb_007163_120 0.0735289204 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_000185_030 Hb_000185_030 Hb_000297_010 Hb_000297_010 Hb_000185_030--Hb_000297_010 Hb_000710_060 Hb_000710_060 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_001633_210 Hb_001633_210 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000840_250 Hb_000840_250 Hb_000185_030--Hb_000840_250 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000297_010--Hb_000840_250 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_000710_060--Hb_001633_210 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_003761_010--Hb_001205_240 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_001633_210--Hb_000840_250 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_001633_210--Hb_000297_010 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_008725_230--Hb_000028_370 Hb_000840_250--Hb_000614_250 Hb_001014_030 Hb_001014_030 Hb_000840_250--Hb_001014_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6878 16.2213 8.97545 12.5976 10.8826 13.0274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.232 17.3447 18.587 16.3051 8.32571

CAGE analysis