Hb_000185_040

Information

Type -
Description -
Location Contig185: 58698-60436
Sequence    

Annotation

kegg
ID pmum:103343434
description uncharacterized LOC103343434
nr
ID XP_008245310.1
description PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5WEC7
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa005168m1g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18101: 42406-60375 , PASA_asmbl_18102: 47841-60375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_040 0.0 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
2 Hb_011485_070 0.0567970895 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
3 Hb_002740_180 0.0632001927 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001377_490 0.0649663146 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
5 Hb_000318_290 0.0688888391 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
6 Hb_001341_170 0.0690881736 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
7 Hb_002435_120 0.0723311119 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_002675_070 0.0743364769 - - PREDICTED: protein CASC3 [Jatropha curcas]
9 Hb_010964_040 0.0747373677 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
10 Hb_000009_560 0.0759854816 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
11 Hb_001014_030 0.0793814356 - - ATP binding protein, putative [Ricinus communis]
12 Hb_004724_150 0.0798427097 - - expressed protein, putative [Ricinus communis]
13 Hb_004032_150 0.0802772075 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
14 Hb_005490_030 0.0806012048 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
15 Hb_002217_300 0.0807677374 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
16 Hb_089032_040 0.0808715912 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
17 Hb_054865_150 0.081187497 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
18 Hb_000890_210 0.081435665 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
19 Hb_004607_050 0.0819823168 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_001635_060 0.0820107768 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000185_040 Hb_000185_040 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_001341_170 Hb_001341_170 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_011485_070--Hb_001341_170 Hb_004032_150 Hb_004032_150 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080 Hb_002675_070 Hb_002675_070 Hb_011485_070--Hb_002675_070 Hb_005054_100 Hb_005054_100 Hb_002740_180--Hb_005054_100 Hb_054865_150 Hb_054865_150 Hb_002740_180--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_002740_180--Hb_000254_090 Hb_002740_180--Hb_000318_290 Hb_000028_480 Hb_000028_480 Hb_002740_180--Hb_000028_480 Hb_000009_560 Hb_000009_560 Hb_001377_490--Hb_000009_560 Hb_000260_010 Hb_000260_010 Hb_001377_490--Hb_000260_010 Hb_000003_590 Hb_000003_590 Hb_001377_490--Hb_000003_590 Hb_164010_030 Hb_164010_030 Hb_001377_490--Hb_164010_030 Hb_000003_250 Hb_000003_250 Hb_001377_490--Hb_000003_250 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_000318_290--Hb_054865_150 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000107_330 Hb_000107_330 Hb_002435_120--Hb_000107_330 Hb_002435_120--Hb_001377_490 Hb_000086_400 Hb_000086_400 Hb_002435_120--Hb_000086_400 Hb_001085_060 Hb_001085_060 Hb_002435_120--Hb_001085_060 Hb_000120_460 Hb_000120_460 Hb_002435_120--Hb_000120_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39266 11.3782 7.02323 14.613 13.3533 20.5488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9944 15.1709 22.9942 15.9351 10.5617

CAGE analysis