Hb_000185_070

Information

Type -
Description -
Location Contig185: 92987-96746
Sequence    

Annotation

kegg
ID rcu:RCOM_1509610
description hypothetical protein
nr
ID XP_002511353.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q10430
description Kinetochore protein spc25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spc25 PE=1 SV=1
trembl
ID B9RAX8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1509610 PE=4 SV=1
Gene Ontology
ID GO:0006302
description probable kinetochore protein spc25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18105: 92992-96793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000302_270 0.0608987378 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_027428_010 0.0666687867 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
4 Hb_005337_090 0.0703352903 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
5 Hb_001981_030 0.071675609 - - nuclear acid binding protein, putative [Ricinus communis]
6 Hb_003528_010 0.075255231 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
7 Hb_002872_030 0.0761550138 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
8 Hb_002197_020 0.0767395541 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
9 Hb_000010_400 0.0782337672 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
10 Hb_005000_190 0.078340139 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
11 Hb_005488_140 0.0792557353 - - 30S ribosomal protein S5, putative [Ricinus communis]
12 Hb_000521_320 0.0793931074 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
13 Hb_008246_040 0.0806441869 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
14 Hb_012762_030 0.0829310086 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
15 Hb_001728_050 0.0833378446 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
16 Hb_032920_060 0.0847832123 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
17 Hb_007982_080 0.0850026571 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
18 Hb_007813_040 0.0850639732 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
19 Hb_011995_010 0.0857239883 - - dc50, putative [Ricinus communis]
20 Hb_000308_030 0.08607295 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]

Gene co-expression network

sample Hb_000185_070 Hb_000185_070 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_027428_010 Hb_027428_010 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030 Hb_000521_320 Hb_000521_320 Hb_000302_270--Hb_000521_320 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_027428_010--Hb_002872_030 Hb_073973_130 Hb_073973_130 Hb_027428_010--Hb_073973_130 Hb_027428_010--Hb_005337_090 Hb_006588_070 Hb_006588_070 Hb_027428_010--Hb_006588_070 Hb_010381_090 Hb_010381_090 Hb_027428_010--Hb_010381_090 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_005000_190 Hb_005000_190 Hb_001981_030--Hb_005000_190 Hb_002686_170 Hb_002686_170 Hb_001981_030--Hb_002686_170 Hb_001153_190 Hb_001153_190 Hb_001981_030--Hb_001153_190 Hb_002197_020 Hb_002197_020 Hb_001981_030--Hb_002197_020 Hb_000915_180 Hb_000915_180 Hb_001981_030--Hb_000915_180 Hb_032920_060 Hb_032920_060 Hb_003528_010--Hb_032920_060 Hb_003549_150 Hb_003549_150 Hb_003528_010--Hb_003549_150 Hb_003528_010--Hb_010381_090 Hb_006588_200 Hb_006588_200 Hb_003528_010--Hb_006588_200 Hb_000205_300 Hb_000205_300 Hb_003528_010--Hb_000205_300 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_002872_030--Hb_006588_070 Hb_002872_030--Hb_073973_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9671 9.53774 11.6629 7.61139 7.46772 9.43065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60325 9.75024 10.1408 8.63463 4.11442

CAGE analysis