Hb_000185_090

Information

Type desease resistance
Description Gene Name: CDC48_N
Location Contig185: 113624-118065
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09220g
description POPTRDRAFT_824692; hypothetical protein
nr
ID XP_012080012.1
description PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
swissprot
ID P54774
description Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1
trembl
ID A0A067KFM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11436 PE=3 SV=1
Gene Ontology
ID GO:0005524
description cell division cycle protein 48 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18107: 113682-116807 , PASA_asmbl_18108: 117110-117956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_090 0.0 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
2 Hb_113216_010 0.0776476594 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
3 Hb_000211_090 0.0837281184 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
4 Hb_003666_050 0.0847097702 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
5 Hb_000779_040 0.086243537 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
6 Hb_000016_180 0.0868768814 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
7 Hb_019871_020 0.0871645581 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
8 Hb_000608_340 0.0882643571 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
9 Hb_174865_050 0.0890051064 - - PREDICTED: neuroguidin [Jatropha curcas]
10 Hb_000213_060 0.0975441993 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
11 Hb_000792_110 0.0985278237 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
12 Hb_000212_280 0.1017042608 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
13 Hb_009615_110 0.1018973101 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
14 Hb_000573_040 0.1019267311 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
15 Hb_000320_440 0.1019376333 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
16 Hb_006173_020 0.1026418952 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
17 Hb_000890_220 0.1031508318 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
18 Hb_003673_020 0.1042210701 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
19 Hb_000771_160 0.1047494875 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
20 Hb_002918_070 0.1051034653 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]

Gene co-expression network

sample Hb_000185_090 Hb_000185_090 Hb_113216_010 Hb_113216_010 Hb_000185_090--Hb_113216_010 Hb_000211_090 Hb_000211_090 Hb_000185_090--Hb_000211_090 Hb_003666_050 Hb_003666_050 Hb_000185_090--Hb_003666_050 Hb_000779_040 Hb_000779_040 Hb_000185_090--Hb_000779_040 Hb_000016_180 Hb_000016_180 Hb_000185_090--Hb_000016_180 Hb_019871_020 Hb_019871_020 Hb_000185_090--Hb_019871_020 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_113216_010--Hb_000016_180 Hb_002837_070 Hb_002837_070 Hb_113216_010--Hb_002837_070 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_000211_090--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_090--Hb_000792_110 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000890_220 Hb_000890_220 Hb_000211_090--Hb_000890_220 Hb_000211_090--Hb_003666_050 Hb_003673_020 Hb_003673_020 Hb_000211_090--Hb_003673_020 Hb_001195_030 Hb_001195_030 Hb_003666_050--Hb_001195_030 Hb_000608_340 Hb_000608_340 Hb_003666_050--Hb_000608_340 Hb_000181_310 Hb_000181_310 Hb_003666_050--Hb_000181_310 Hb_003666_050--Hb_174865_050 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000779_040--Hb_003673_020 Hb_000016_180--Hb_000779_040 Hb_000016_180--Hb_002918_070 Hb_000016_180--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_000016_180--Hb_000213_060 Hb_019871_020--Hb_000608_340 Hb_001582_030 Hb_001582_030 Hb_019871_020--Hb_001582_030 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_019871_020--Hb_004531_090 Hb_000940_040 Hb_000940_040 Hb_019871_020--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
147.061 39.2241 6.38427 10.703 211.204 206.644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.2861 26.8762 26.51 25.0389 12.6931

CAGE analysis