Hb_000185_120

Information

Type -
Description -
Location Contig185: 157774-161065
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09190g
description POPTRDRAFT_903753; hypothetical protein
nr
ID XP_012080014.1
description PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IEV3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18110: 157722-161078 , PASA_asmbl_18114: 159470-159877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_120 0.0 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
2 Hb_063134_010 0.1233734397 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
3 Hb_000049_040 0.1236069902 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
4 Hb_000556_080 0.1271891308 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
5 Hb_001439_120 0.1291672999 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008016_010 0.129830959 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
7 Hb_002955_030 0.1308414162 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002498_100 0.1346961977 - - bcr-associated protein, bap, putative [Ricinus communis]
9 Hb_000386_040 0.1356187113 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_002200_110 0.1358295305 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007193_100 0.1364421585 - - syntaxin family protein [Populus trichocarpa]
12 Hb_010174_130 0.1371640833 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
13 Hb_000365_360 0.1384513592 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_032531_030 0.1387648903 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_011224_080 0.1390724793 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
16 Hb_003125_040 0.1395894565 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
17 Hb_007919_050 0.1400848986 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
18 Hb_000084_310 0.1402535111 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
19 Hb_012340_010 0.1406123236 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
20 Hb_014834_120 0.1413374557 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]

Gene co-expression network

sample Hb_000185_120 Hb_000185_120 Hb_063134_010 Hb_063134_010 Hb_000185_120--Hb_063134_010 Hb_000049_040 Hb_000049_040 Hb_000185_120--Hb_000049_040 Hb_000556_080 Hb_000556_080 Hb_000185_120--Hb_000556_080 Hb_001439_120 Hb_001439_120 Hb_000185_120--Hb_001439_120 Hb_008016_010 Hb_008016_010 Hb_000185_120--Hb_008016_010 Hb_002955_030 Hb_002955_030 Hb_000185_120--Hb_002955_030 Hb_007193_100 Hb_007193_100 Hb_063134_010--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_063134_010--Hb_029510_140 Hb_003005_020 Hb_003005_020 Hb_063134_010--Hb_003005_020 Hb_000175_070 Hb_000175_070 Hb_063134_010--Hb_000175_070 Hb_000172_370 Hb_000172_370 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090 Hb_000386_040 Hb_000386_040 Hb_000049_040--Hb_000386_040 Hb_010120_030 Hb_010120_030 Hb_000049_040--Hb_010120_030 Hb_182026_020 Hb_182026_020 Hb_000049_040--Hb_182026_020 Hb_002014_080 Hb_002014_080 Hb_000049_040--Hb_002014_080 Hb_007919_050 Hb_007919_050 Hb_000049_040--Hb_007919_050 Hb_010174_130 Hb_010174_130 Hb_000049_040--Hb_010174_130 Hb_000556_080--Hb_182026_020 Hb_001135_160 Hb_001135_160 Hb_000556_080--Hb_001135_160 Hb_000556_080--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_000556_080--Hb_011224_080 Hb_010638_020 Hb_010638_020 Hb_000556_080--Hb_010638_020 Hb_012340_010 Hb_012340_010 Hb_000556_080--Hb_012340_010 Hb_001439_120--Hb_007919_050 Hb_000029_030 Hb_000029_030 Hb_001439_120--Hb_000029_030 Hb_001439_120--Hb_010638_020 Hb_001439_120--Hb_182026_020 Hb_021068_050 Hb_021068_050 Hb_001439_120--Hb_021068_050 Hb_001437_040 Hb_001437_040 Hb_008016_010--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_008016_010--Hb_000933_140 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_098709_010 Hb_098709_010 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100 Hb_005348_080 Hb_005348_080 Hb_008016_010--Hb_005348_080 Hb_001504_170 Hb_001504_170 Hb_002955_030--Hb_001504_170 Hb_000345_560 Hb_000345_560 Hb_002955_030--Hb_000345_560 Hb_003055_050 Hb_003055_050 Hb_002955_030--Hb_003055_050 Hb_031042_040 Hb_031042_040 Hb_002955_030--Hb_031042_040 Hb_000028_050 Hb_000028_050 Hb_002955_030--Hb_000028_050 Hb_002377_040 Hb_002377_040 Hb_002955_030--Hb_002377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6667 3.59743 10.328 36.6103 129.695 117.339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.3042 82.0939 82.0783 9.95825 10.9897

CAGE analysis