Hb_000185_170

Information

Type -
Description -
Location Contig185: 207231-218801
Sequence    

Annotation

kegg
ID rcu:RCOM_0105540
description ATP binding protein, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002524511.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID C0LGN2
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
trembl
ID B9SEU2
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0105540 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at3g14840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18123: 207313-218835 , PASA_asmbl_18124: 215791-215916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_170 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_070136_010 0.0637706596 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_000037_200 0.0693714087 - - RNA binding protein, putative [Ricinus communis]
4 Hb_002078_320 0.0763666045 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
5 Hb_000987_020 0.0815109884 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
6 Hb_001629_120 0.089053074 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
7 Hb_000265_170 0.090712926 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
8 Hb_000023_130 0.0908870833 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
9 Hb_000759_040 0.0958148159 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
10 Hb_000990_040 0.0973225489 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
11 Hb_001352_030 0.0995833443 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
12 Hb_093364_010 0.1003560197 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
13 Hb_004611_050 0.1006255661 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
14 Hb_000062_050 0.1023990458 - - protein binding protein, putative [Ricinus communis]
15 Hb_001301_260 0.1027868902 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
16 Hb_005486_020 0.1039306557 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
17 Hb_078582_010 0.1050639471 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
18 Hb_044653_050 0.108087175 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
19 Hb_001488_420 0.1087956524 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
20 Hb_004855_080 0.1109904146 - - hypothetical protein JCGZ_25039 [Jatropha curcas]

Gene co-expression network

sample Hb_000185_170 Hb_000185_170 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_000037_200 Hb_000037_200 Hb_000185_170--Hb_000037_200 Hb_002078_320 Hb_002078_320 Hb_000185_170--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000185_170--Hb_000987_020 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_000922_160 Hb_000922_160 Hb_070136_010--Hb_000922_160 Hb_070136_010--Hb_002078_320 Hb_119066_010 Hb_119066_010 Hb_070136_010--Hb_119066_010 Hb_070136_010--Hb_000037_200 Hb_070136_010--Hb_001629_120 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_000037_200--Hb_000987_020 Hb_002890_160 Hb_002890_160 Hb_000037_200--Hb_002890_160 Hb_003506_010 Hb_003506_010 Hb_002078_320--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_002078_320--Hb_004162_320 Hb_000901_010 Hb_000901_010 Hb_002078_320--Hb_000901_010 Hb_002078_320--Hb_000987_020 Hb_020805_070 Hb_020805_070 Hb_002078_320--Hb_020805_070 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_000987_020--Hb_000901_010 Hb_000694_050 Hb_000694_050 Hb_000987_020--Hb_000694_050 Hb_005365_010 Hb_005365_010 Hb_001629_120--Hb_005365_010 Hb_000173_270 Hb_000173_270 Hb_001629_120--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_001629_120--Hb_000818_090 Hb_001629_120--Hb_000023_130 Hb_001051_010 Hb_001051_010 Hb_001629_120--Hb_001051_010 Hb_001352_030 Hb_001352_030 Hb_000265_170--Hb_001352_030 Hb_003337_020 Hb_003337_020 Hb_000265_170--Hb_003337_020 Hb_003531_050 Hb_003531_050 Hb_000265_170--Hb_003531_050 Hb_111997_010 Hb_111997_010 Hb_000265_170--Hb_111997_010 Hb_001606_010 Hb_001606_010 Hb_000265_170--Hb_001606_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0247321 5.29047 15.0198 7.58145 0 0.0149888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0501262 0.0197234 0 3.85766 11.431

CAGE analysis