Hb_000185_190

Information

Type -
Description -
Location Contig185: 243273-244046
Sequence    

Annotation

kegg
ID mdm:103429358
description protein trichome birefringence-like 41
nr
ID XP_010093465.1
description hypothetical protein L484_017526 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RFY0
description Uncharacterized protein OS=Morus notabilis GN=L484_017526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18125: 237654-243965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_190 0.0 - - hypothetical protein L484_017526 [Morus notabilis]
2 Hb_015754_010 0.0015319215 - - Galactose oxidase precursor, putative [Ricinus communis]
3 Hb_001579_080 0.0035550745 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_001031_130 0.0039809871 - - zinc finger protein, putative [Ricinus communis]
5 Hb_002081_110 0.0040722076 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
6 Hb_171420_010 0.0066101583 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
7 Hb_000771_010 0.0074880411 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000042_410 0.0075175458 - - Patatin precursor, putative [Ricinus communis]
9 Hb_014549_030 0.0080374509 - - receptor-kinase, putative [Ricinus communis]
10 Hb_004994_270 0.0088687283 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
11 Hb_166937_010 0.0116360295 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
12 Hb_013607_020 0.0132372706 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
13 Hb_064476_010 0.0172356966 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
14 Hb_002986_150 0.018228515 - - hypothetical protein glysoja_022060 [Glycine soja]
15 Hb_001728_090 0.0206157898 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
16 Hb_000243_270 0.0212577217 - - Pectinesterase-2 precursor, putative [Ricinus communis]
17 Hb_001300_110 0.0222884196 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
18 Hb_007524_020 0.0245069846 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
19 Hb_000506_060 0.0281092857 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
20 Hb_003549_110 0.0285532174 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]

Gene co-expression network

sample Hb_000185_190 Hb_000185_190 Hb_015754_010 Hb_015754_010 Hb_000185_190--Hb_015754_010 Hb_001579_080 Hb_001579_080 Hb_000185_190--Hb_001579_080 Hb_001031_130 Hb_001031_130 Hb_000185_190--Hb_001031_130 Hb_002081_110 Hb_002081_110 Hb_000185_190--Hb_002081_110 Hb_171420_010 Hb_171420_010 Hb_000185_190--Hb_171420_010 Hb_000771_010 Hb_000771_010 Hb_000185_190--Hb_000771_010 Hb_015754_010--Hb_001579_080 Hb_015754_010--Hb_001031_130 Hb_015754_010--Hb_002081_110 Hb_015754_010--Hb_000771_010 Hb_015754_010--Hb_171420_010 Hb_001579_080--Hb_000771_010 Hb_001579_080--Hb_001031_130 Hb_001579_080--Hb_002081_110 Hb_166937_010 Hb_166937_010 Hb_001579_080--Hb_166937_010 Hb_001031_130--Hb_002081_110 Hb_001031_130--Hb_171420_010 Hb_000042_410 Hb_000042_410 Hb_001031_130--Hb_000042_410 Hb_014549_030 Hb_014549_030 Hb_001031_130--Hb_014549_030 Hb_004994_270 Hb_004994_270 Hb_001031_130--Hb_004994_270 Hb_002081_110--Hb_171420_010 Hb_002081_110--Hb_000042_410 Hb_002081_110--Hb_014549_030 Hb_002081_110--Hb_004994_270 Hb_171420_010--Hb_000042_410 Hb_171420_010--Hb_014549_030 Hb_171420_010--Hb_004994_270 Hb_000771_010--Hb_166937_010 Hb_013607_020 Hb_013607_020 Hb_000771_010--Hb_013607_020 Hb_064476_010 Hb_064476_010 Hb_000771_010--Hb_064476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.88327 1.03294 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis