Hb_000185_210

Information

Type -
Description -
Location Contig185: 258497-262651
Sequence    

Annotation

kegg
ID rcu:RCOM_0216630
description 50S ribosomal protein L13, putative
nr
ID XP_012068509.1
description PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
swissprot
ID Q9SYL9
description 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1
trembl
ID A0A067L1A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03565 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_210 0.0 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
2 Hb_002876_220 0.1248309265 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
3 Hb_012022_150 0.1250803228 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
4 Hb_003029_070 0.1300041184 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002477_300 0.133157909 - - transcription factor, putative [Ricinus communis]
6 Hb_008173_020 0.1389590111 - - glutathione peroxidase [Populus euphratica]
7 Hb_000012_250 0.1410583013 - - hypothetical protein L484_019524 [Morus notabilis]
8 Hb_001476_070 0.1435114729 - - MinE protein [Manihot esculenta]
9 Hb_000413_060 0.1435829304 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
10 Hb_002168_060 0.1445647953 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
11 Hb_000300_180 0.1447936204 - - transcription initiation factor brf1, putative [Ricinus communis]
12 Hb_146673_010 0.1449008747 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
13 Hb_001427_200 0.146313189 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
14 Hb_002163_040 0.146328738 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004440_020 0.1466841979 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
16 Hb_000088_190 0.1475197988 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000163_100 0.1493975647 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
18 Hb_001956_040 0.1506613361 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001998_120 0.1513522458 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
20 Hb_000731_160 0.1514098409 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000185_210 Hb_000185_210 Hb_002876_220 Hb_002876_220 Hb_000185_210--Hb_002876_220 Hb_012022_150 Hb_012022_150 Hb_000185_210--Hb_012022_150 Hb_003029_070 Hb_003029_070 Hb_000185_210--Hb_003029_070 Hb_002477_300 Hb_002477_300 Hb_000185_210--Hb_002477_300 Hb_008173_020 Hb_008173_020 Hb_000185_210--Hb_008173_020 Hb_000012_250 Hb_000012_250 Hb_000185_210--Hb_000012_250 Hb_002876_220--Hb_003029_070 Hb_000300_180 Hb_000300_180 Hb_002876_220--Hb_000300_180 Hb_002876_220--Hb_012022_150 Hb_007002_020 Hb_007002_020 Hb_002876_220--Hb_007002_020 Hb_000051_060 Hb_000051_060 Hb_002876_220--Hb_000051_060 Hb_001935_100 Hb_001935_100 Hb_002876_220--Hb_001935_100 Hb_022693_140 Hb_022693_140 Hb_012022_150--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_003029_070--Hb_000300_180 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_003029_070--Hb_000804_040 Hb_004449_170 Hb_004449_170 Hb_002477_300--Hb_004449_170 Hb_146673_010 Hb_146673_010 Hb_002477_300--Hb_146673_010 Hb_000465_090 Hb_000465_090 Hb_002477_300--Hb_000465_090 Hb_000731_160 Hb_000731_160 Hb_002477_300--Hb_000731_160 Hb_001329_290 Hb_001329_290 Hb_002477_300--Hb_001329_290 Hb_001012_010 Hb_001012_010 Hb_002477_300--Hb_001012_010 Hb_000029_310 Hb_000029_310 Hb_008173_020--Hb_000029_310 Hb_000270_260 Hb_000270_260 Hb_008173_020--Hb_000270_260 Hb_001847_020 Hb_001847_020 Hb_008173_020--Hb_001847_020 Hb_017904_010 Hb_017904_010 Hb_008173_020--Hb_017904_010 Hb_111985_050 Hb_111985_050 Hb_008173_020--Hb_111985_050 Hb_000362_200 Hb_000362_200 Hb_008173_020--Hb_000362_200 Hb_002759_190 Hb_002759_190 Hb_000012_250--Hb_002759_190 Hb_000012_250--Hb_000731_160 Hb_001863_380 Hb_001863_380 Hb_000012_250--Hb_001863_380 Hb_107879_010 Hb_107879_010 Hb_000012_250--Hb_107879_010 Hb_000163_100 Hb_000163_100 Hb_000012_250--Hb_000163_100 Hb_001472_100 Hb_001472_100 Hb_000012_250--Hb_001472_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5786 0.273234 3.14632 0.369332 1.37108 1.13598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47563 2.14241 1.38781 0.719651 1.99501

CAGE analysis