Hb_000185_220

Information

Type -
Description -
Location Contig185: 264282-274531
Sequence    

Annotation

kegg
ID rcu:RCOM_0216620
description hypothetical protein
nr
ID XP_012068508.1
description PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
swissprot
ID P73555
description Uncharacterized membrane protein sll0875 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1
trembl
ID A0A067KXZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03564 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105631115

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18129: 264288-274082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_220 0.0 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
2 Hb_006059_010 0.0630738418 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
3 Hb_001195_400 0.0673160486 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
4 Hb_003206_110 0.0678151486 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
5 Hb_001080_300 0.068108351 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
6 Hb_000309_050 0.0685495784 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
7 Hb_001975_150 0.0697724867 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
8 Hb_000297_120 0.0721518894 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
9 Hb_158530_020 0.0725578871 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
10 Hb_170138_010 0.0727418288 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032920_070 0.0762872695 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
12 Hb_015675_040 0.076862595 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
13 Hb_002392_010 0.0778180079 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
14 Hb_005601_040 0.0795715518 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
15 Hb_012733_040 0.0811483328 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
16 Hb_000035_390 0.0828637665 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
17 Hb_004046_030 0.0844008241 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
18 Hb_066842_010 0.0860335426 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
19 Hb_000841_050 0.0860570623 - - hypothetical protein L484_019972 [Morus notabilis]
20 Hb_001946_390 0.0864717936 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000185_220 Hb_000185_220 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_000012_310 Hb_000012_310 Hb_006059_010--Hb_000012_310 Hb_002660_170 Hb_002660_170 Hb_006059_010--Hb_002660_170 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_001195_400--Hb_003206_110 Hb_003206_110--Hb_170138_010 Hb_004046_030 Hb_004046_030 Hb_003206_110--Hb_004046_030 Hb_003206_110--Hb_000359_210 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001080_300--Hb_001975_150 Hb_000309_050--Hb_003206_110 Hb_004480_100 Hb_004480_100 Hb_000309_050--Hb_004480_100 Hb_000309_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_000309_050--Hb_000504_180 Hb_000309_050--Hb_000297_120 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_001975_150--Hb_000504_180 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19271 7.88048 11.7396 20.0958 5.08243 7.23814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1475 10.6784 11.4561 16.0224 20.9284

CAGE analysis