Hb_000185_230

Information

Type -
Description -
Location Contig185: 274830-276077
Sequence    

Annotation

kegg
ID rcu:RCOM_0216610
description WD-repeat protein, putative
nr
ID XP_002532118.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9M3B4
description Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1
trembl
ID B9T1J9
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_230 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_001214_190 0.134885801 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
3 Hb_005883_070 0.1363547344 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
4 Hb_000076_100 0.1420676297 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
5 Hb_124951_010 0.1434393707 - - chitinase-like protein [Hevea brasiliensis]
6 Hb_001059_090 0.1549307428 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
7 Hb_176472_020 0.1630307108 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000109_130 0.1709284904 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
9 Hb_047442_010 0.1722868038 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
10 Hb_000317_190 0.174403759 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
11 Hb_015026_040 0.1759624495 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
12 Hb_004449_140 0.1772481543 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
13 Hb_000684_100 0.1774624199 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
14 Hb_002600_130 0.1806273604 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
15 Hb_008173_060 0.1812109136 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
16 Hb_006775_070 0.1827651984 - - zinc finger protein, putative [Ricinus communis]
17 Hb_003529_180 0.1843651095 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
18 Hb_000221_230 0.1849219474 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
19 Hb_000134_030 0.1859142952 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
20 Hb_003549_130 0.1877054101 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_000185_230 Hb_000185_230 Hb_001214_190 Hb_001214_190 Hb_000185_230--Hb_001214_190 Hb_005883_070 Hb_005883_070 Hb_000185_230--Hb_005883_070 Hb_000076_100 Hb_000076_100 Hb_000185_230--Hb_000076_100 Hb_124951_010 Hb_124951_010 Hb_000185_230--Hb_124951_010 Hb_001059_090 Hb_001059_090 Hb_000185_230--Hb_001059_090 Hb_176472_020 Hb_176472_020 Hb_000185_230--Hb_176472_020 Hb_004449_140 Hb_004449_140 Hb_001214_190--Hb_004449_140 Hb_001214_190--Hb_124951_010 Hb_003430_040 Hb_003430_040 Hb_001214_190--Hb_003430_040 Hb_143813_020 Hb_143813_020 Hb_001214_190--Hb_143813_020 Hb_000684_100 Hb_000684_100 Hb_001214_190--Hb_000684_100 Hb_005883_070--Hb_001059_090 Hb_000109_130 Hb_000109_130 Hb_005883_070--Hb_000109_130 Hb_006775_070 Hb_006775_070 Hb_005883_070--Hb_006775_070 Hb_006545_020 Hb_006545_020 Hb_005883_070--Hb_006545_020 Hb_047442_010 Hb_047442_010 Hb_005883_070--Hb_047442_010 Hb_015026_020 Hb_015026_020 Hb_000076_100--Hb_015026_020 Hb_000076_100--Hb_124951_010 Hb_010368_080 Hb_010368_080 Hb_000076_100--Hb_010368_080 Hb_000076_100--Hb_000109_130 Hb_000076_100--Hb_000684_100 Hb_000317_190 Hb_000317_190 Hb_000076_100--Hb_000317_190 Hb_002600_130 Hb_002600_130 Hb_124951_010--Hb_002600_130 Hb_124951_010--Hb_000317_190 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_000134_030 Hb_000134_030 Hb_124951_010--Hb_000134_030 Hb_004586_130 Hb_004586_130 Hb_001059_090--Hb_004586_130 Hb_000221_230 Hb_000221_230 Hb_001059_090--Hb_000221_230 Hb_002151_130 Hb_002151_130 Hb_001059_090--Hb_002151_130 Hb_001059_090--Hb_000109_130 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_007545_110 Hb_007545_110 Hb_176472_020--Hb_007545_110 Hb_176472_020--Hb_004449_140 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169333 0.986216 2.09924 0.363277 0.25756 0.100308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116152 0.121826 0.170306 0.109727 0.0631663

CAGE analysis