Hb_000186_010

Information

Type -
Description -
Location Contig186: 47895-54473
Sequence    

Annotation

kegg
ID rcu:RCOM_0902860
description EH-domain-containing protein, putative
nr
ID XP_012091266.1
description PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
swissprot
ID B3LF48
description EH domain-containing protein 2 OS=Arabidopsis thaliana GN=EHD2 PE=1 SV=1
trembl
ID A0A067JMH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21155 PE=4 SV=1
Gene Ontology
ID GO:0005737
description eh domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18220: 48237-51643 , PASA_asmbl_18221: 51880-54390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_010 0.0 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
2 Hb_000085_280 0.090087243 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
3 Hb_000042_230 0.0983024165 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
4 Hb_000028_050 0.1002186287 - - aldose-1-epimerase, putative [Ricinus communis]
5 Hb_005288_120 0.1020042688 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
6 Hb_013405_130 0.102393131 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
7 Hb_001252_170 0.1025740351 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
8 Hb_000671_100 0.1026347152 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
9 Hb_000028_030 0.1031617874 - - amidase, putative [Ricinus communis]
10 Hb_035524_030 0.1056747768 - - conserved hypothetical protein [Ricinus communis]
11 Hb_024714_030 0.1060741975 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
12 Hb_002955_010 0.1089737671 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
13 Hb_003050_040 0.1095786028 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
14 Hb_003352_050 0.1126861013 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
15 Hb_000705_260 0.1138799778 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000017_340 0.1144784718 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
17 Hb_118301_010 0.1148329335 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
18 Hb_000282_150 0.1154591612 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
19 Hb_002290_060 0.1154830987 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
20 Hb_002014_080 0.1157888675 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_010 Hb_000186_010 Hb_000085_280 Hb_000085_280 Hb_000186_010--Hb_000085_280 Hb_000042_230 Hb_000042_230 Hb_000186_010--Hb_000042_230 Hb_000028_050 Hb_000028_050 Hb_000186_010--Hb_000028_050 Hb_005288_120 Hb_005288_120 Hb_000186_010--Hb_005288_120 Hb_013405_130 Hb_013405_130 Hb_000186_010--Hb_013405_130 Hb_001252_170 Hb_001252_170 Hb_000186_010--Hb_001252_170 Hb_035524_030 Hb_035524_030 Hb_000085_280--Hb_035524_030 Hb_002290_060 Hb_002290_060 Hb_000085_280--Hb_002290_060 Hb_000085_280--Hb_013405_130 Hb_000085_280--Hb_005288_120 Hb_019613_020 Hb_019613_020 Hb_000085_280--Hb_019613_020 Hb_000028_030 Hb_000028_030 Hb_000042_230--Hb_000028_030 Hb_000152_740 Hb_000152_740 Hb_000042_230--Hb_000152_740 Hb_000017_340 Hb_000017_340 Hb_000042_230--Hb_000017_340 Hb_000042_230--Hb_013405_130 Hb_000042_230--Hb_005288_120 Hb_003352_050 Hb_003352_050 Hb_000028_050--Hb_003352_050 Hb_000028_050--Hb_000085_280 Hb_003050_040 Hb_003050_040 Hb_000028_050--Hb_003050_040 Hb_013479_020 Hb_013479_020 Hb_000028_050--Hb_013479_020 Hb_000085_340 Hb_000085_340 Hb_000028_050--Hb_000085_340 Hb_005288_120--Hb_035524_030 Hb_010261_020 Hb_010261_020 Hb_005288_120--Hb_010261_020 Hb_005288_120--Hb_000017_340 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_005288_120--Hb_000671_100 Hb_013405_130--Hb_010261_020 Hb_013405_130--Hb_005288_120 Hb_013405_130--Hb_000028_030 Hb_118301_010 Hb_118301_010 Hb_001252_170--Hb_118301_010 Hb_001477_010 Hb_001477_010 Hb_001252_170--Hb_001477_010 Hb_077219_010 Hb_077219_010 Hb_001252_170--Hb_077219_010 Hb_001252_170--Hb_002290_060 Hb_001252_170--Hb_000152_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.7956 6.07603 3.39113 9.56297 36.0465 72.4276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7928 15.1321 16.5616 12.0036 2.89899

CAGE analysis