Hb_000186_100

Information

Type -
Description -
Location Contig186: 195269-195961
Sequence    

Annotation

kegg
ID cit:102611819
description uncharacterized LOC102611819
nr
ID XP_012091278.1
description PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
swissprot
ID Q8LA32
description Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 SV=1
trembl
ID A0A067JAB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21163 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18232: 195075-195399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_100 0.0 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
2 Hb_017111_010 0.1239902654 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
3 Hb_002388_060 0.1467320824 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007545_210 0.1563687133 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
5 Hb_040506_010 0.1682259567 - - protein binding protein, putative [Ricinus communis]
6 Hb_003687_200 0.1712730716 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
7 Hb_032264_130 0.174814823 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
8 Hb_000523_020 0.1764359246 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
9 Hb_001195_110 0.1996296611 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_000270_400 0.2007002879 - - lipase, putative [Ricinus communis]
11 Hb_000313_320 0.2016859834 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
12 Hb_123104_010 0.2023540079 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_011616_030 0.2026776426 - - -
14 Hb_126669_010 0.2029474859 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
15 Hb_000613_020 0.2030533353 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
16 Hb_000156_030 0.208772435 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000138_190 0.2112759309 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
18 Hb_007741_170 0.2124028221 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
19 Hb_000416_100 0.2137194252 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
20 Hb_004254_040 0.2154692414 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_100 Hb_000186_100 Hb_017111_010 Hb_017111_010 Hb_000186_100--Hb_017111_010 Hb_002388_060 Hb_002388_060 Hb_000186_100--Hb_002388_060 Hb_007545_210 Hb_007545_210 Hb_000186_100--Hb_007545_210 Hb_040506_010 Hb_040506_010 Hb_000186_100--Hb_040506_010 Hb_003687_200 Hb_003687_200 Hb_000186_100--Hb_003687_200 Hb_032264_130 Hb_032264_130 Hb_000186_100--Hb_032264_130 Hb_000523_020 Hb_000523_020 Hb_017111_010--Hb_000523_020 Hb_017111_010--Hb_002388_060 Hb_017111_010--Hb_003687_200 Hb_017111_010--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_017111_010--Hb_126669_010 Hb_002388_060--Hb_007545_210 Hb_002388_060--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_002388_060--Hb_000416_100 Hb_000270_400 Hb_000270_400 Hb_002388_060--Hb_000270_400 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_007545_210--Hb_000270_400 Hb_007545_210--Hb_000523_020 Hb_007545_210--Hb_000416_100 Hb_002627_060 Hb_002627_060 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_005470_010 Hb_005470_010 Hb_040506_010--Hb_005470_010 Hb_007382_040 Hb_007382_040 Hb_040506_010--Hb_007382_040 Hb_000733_040 Hb_000733_040 Hb_040506_010--Hb_000733_040 Hb_004307_040 Hb_004307_040 Hb_040506_010--Hb_004307_040 Hb_000895_040 Hb_000895_040 Hb_040506_010--Hb_000895_040 Hb_003304_050 Hb_003304_050 Hb_003687_200--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_003687_200--Hb_000641_030 Hb_000009_640 Hb_000009_640 Hb_003687_200--Hb_000009_640 Hb_003687_200--Hb_000416_100 Hb_011616_030 Hb_011616_030 Hb_032264_130--Hb_011616_030 Hb_053262_010 Hb_053262_010 Hb_032264_130--Hb_053262_010 Hb_019936_010 Hb_019936_010 Hb_032264_130--Hb_019936_010 Hb_032264_130--Hb_007545_210 Hb_170116_010 Hb_170116_010 Hb_032264_130--Hb_170116_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
212.949 3.64926 12.6558 2.78332 59.773 63.7624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3622 6.90141 21.1519 2.25791 0.764431

CAGE analysis