Hb_000186_160

Information

Type -
Description -
Location Contig186: 232812-235564
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01120g
description POPTRDRAFT_771004; hypothetical protein
nr
ID XP_002317166.2
description hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9HZF0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01120g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18233: 233396-234504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_160 0.0 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
2 Hb_029622_060 0.0970272387 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
3 Hb_003787_030 0.1044359215 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000815_120 0.1076480869 - - calcium ion binding protein, putative [Ricinus communis]
5 Hb_123689_010 0.1076781212 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
6 Hb_006573_240 0.1125304786 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
7 Hb_002301_070 0.1132654083 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_004807_040 0.1150910804 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
9 Hb_010738_020 0.1157726582 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_000928_260 0.1176486108 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
11 Hb_004143_080 0.1178475753 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
12 Hb_003033_020 0.1192935713 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
13 Hb_010697_020 0.1219597875 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000152_300 0.1230151816 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
15 Hb_010666_020 0.1232599911 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
16 Hb_000433_040 0.1237153493 - - -
17 Hb_081344_010 0.1239777551 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_127349_020 0.1246896924 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_000140_040 0.1250795178 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
20 Hb_180094_010 0.125278893 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_160 Hb_000186_160 Hb_029622_060 Hb_029622_060 Hb_000186_160--Hb_029622_060 Hb_003787_030 Hb_003787_030 Hb_000186_160--Hb_003787_030 Hb_000815_120 Hb_000815_120 Hb_000186_160--Hb_000815_120 Hb_123689_010 Hb_123689_010 Hb_000186_160--Hb_123689_010 Hb_006573_240 Hb_006573_240 Hb_000186_160--Hb_006573_240 Hb_002301_070 Hb_002301_070 Hb_000186_160--Hb_002301_070 Hb_002413_050 Hb_002413_050 Hb_029622_060--Hb_002413_050 Hb_029622_060--Hb_123689_010 Hb_029622_060--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_029622_060--Hb_010697_020 Hb_029622_060--Hb_002301_070 Hb_029622_060--Hb_000815_120 Hb_003787_030--Hb_002301_070 Hb_000928_260 Hb_000928_260 Hb_003787_030--Hb_000928_260 Hb_003787_030--Hb_006573_240 Hb_003787_030--Hb_010697_020 Hb_003787_030--Hb_000815_120 Hb_004143_080 Hb_004143_080 Hb_003787_030--Hb_004143_080 Hb_000815_120--Hb_004143_080 Hb_004818_010 Hb_004818_010 Hb_000815_120--Hb_004818_010 Hb_000704_020 Hb_000704_020 Hb_000815_120--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_000815_120--Hb_001951_050 Hb_000815_120--Hb_002301_070 Hb_003093_050 Hb_003093_050 Hb_000815_120--Hb_003093_050 Hb_002534_090 Hb_002534_090 Hb_123689_010--Hb_002534_090 Hb_000009_470 Hb_000009_470 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_007044_020 Hb_007044_020 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_003033_020 Hb_003033_020 Hb_006573_240--Hb_003033_020 Hb_006573_240--Hb_000928_260 Hb_006573_240--Hb_002301_070 Hb_002329_050 Hb_002329_050 Hb_006573_240--Hb_002329_050 Hb_000307_100 Hb_000307_100 Hb_006573_240--Hb_000307_100 Hb_002301_070--Hb_000928_260 Hb_002301_070--Hb_010697_020 Hb_002301_070--Hb_004143_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00854765 0.274779 0.292979 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.035078 0.0147393 1.32903

CAGE analysis