Hb_000186_190

Information

Type -
Description -
Location Contig186: 253668-254258
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01630g
description POPTRDRAFT_822745; hypothetical protein
nr
ID XP_012091284.1
description PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
swissprot
ID Q8L8L9
description Uncharacterized protein At4g22160 OS=Arabidopsis thaliana GN=At4g22160 PE=2 SV=2
trembl
ID A0A067JAB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21168 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18235: 253491-254250 , PASA_asmbl_18236: 253773-253932
cDNA
(Sanger)
(ID:Location)		 018_I04r.ab1: 255186-255740 , 036_L09.ab1: 253531-253890 , 041_A11.ab1: 253531-253890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_190 0.0 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
2 Hb_003544_020 0.0815470156 - - PREDICTED: elongin-A [Jatropha curcas]
3 Hb_002289_120 0.0870653475 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
4 Hb_003878_010 0.0874196008 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
5 Hb_005773_060 0.0895916717 - - defender against cell death, putative [Ricinus communis]
6 Hb_002811_260 0.0931281165 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
7 Hb_001817_090 0.094521856 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
8 Hb_001454_400 0.0989746579 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
9 Hb_000163_160 0.1021514813 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
10 Hb_064264_010 0.1024824085 - - hypothetical protein [Zea mays]
11 Hb_007875_030 0.1028512412 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
12 Hb_033594_110 0.104588904 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
13 Hb_004800_230 0.108540154 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
14 Hb_019249_010 0.1095357556 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
15 Hb_128048_010 0.1109000222 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
16 Hb_145880_030 0.1110515224 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
17 Hb_000562_030 0.1120611962 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010407_040 0.1132048982 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
19 Hb_001814_070 0.114791267 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
20 Hb_021419_020 0.1156819544 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000186_190 Hb_000186_190 Hb_003544_020 Hb_003544_020 Hb_000186_190--Hb_003544_020 Hb_002289_120 Hb_002289_120 Hb_000186_190--Hb_002289_120 Hb_003878_010 Hb_003878_010 Hb_000186_190--Hb_003878_010 Hb_005773_060 Hb_005773_060 Hb_000186_190--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000186_190--Hb_002811_260 Hb_001817_090 Hb_001817_090 Hb_000186_190--Hb_001817_090 Hb_003544_020--Hb_005773_060 Hb_001221_320 Hb_001221_320 Hb_003544_020--Hb_001221_320 Hb_003544_020--Hb_002811_260 Hb_008686_080 Hb_008686_080 Hb_003544_020--Hb_008686_080 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_002289_120--Hb_001814_070 Hb_000152_420 Hb_000152_420 Hb_002289_120--Hb_000152_420 Hb_001369_640 Hb_001369_640 Hb_002289_120--Hb_001369_640 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_002289_120--Hb_003878_010 Hb_003878_010--Hb_128048_010 Hb_007875_030 Hb_007875_030 Hb_003878_010--Hb_007875_030 Hb_003878_010--Hb_001814_070 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230 Hb_005773_060--Hb_002811_260 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_002811_260--Hb_128048_010 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_001817_090--Hb_005045_060 Hb_033594_110 Hb_033594_110 Hb_001817_090--Hb_033594_110 Hb_000457_110 Hb_000457_110 Hb_001817_090--Hb_000457_110 Hb_165132_010 Hb_165132_010 Hb_001817_090--Hb_165132_010 Hb_145880_030 Hb_145880_030 Hb_001817_090--Hb_145880_030 Hb_001817_090--Hb_002811_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0854 21.2224 39.1961 41.8219 37.1575 43.842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.8928 69.9658 23.0869 17.2581 4.23067

CAGE analysis