Hb_000186_240

Information

Type -
Description -
Location Contig186: 308704-310782
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00660g
description hypothetical protein
nr
ID XP_012091290.1
description PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21171 PE=3 SV=1
Gene Ontology
ID GO:0010467
description ribosomal protein l4 l1 family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18242: 308633-311494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_240 0.0 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
2 Hb_000200_340 0.0710157188 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_000592_050 0.0735441347 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
4 Hb_000179_210 0.082129991 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
5 Hb_010638_020 0.0848934286 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
6 Hb_000110_160 0.0868095801 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010863_080 0.0874299705 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
8 Hb_011918_080 0.0878575218 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_007575_040 0.0903572765 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
10 Hb_004108_050 0.0917159055 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
11 Hb_182026_020 0.0920923709 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
12 Hb_000622_310 0.0938361934 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
13 Hb_000836_070 0.094203257 - - protein binding protein, putative [Ricinus communis]
14 Hb_000099_200 0.0942780703 - - conserved hypothetical protein [Ricinus communis]
15 Hb_098993_010 0.0951397493 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
16 Hb_002835_410 0.099295276 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
17 Hb_001671_020 0.1004808081 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
18 Hb_002603_100 0.1008911465 - - ATATH9, putative [Ricinus communis]
19 Hb_000975_290 0.1020448914 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
20 Hb_000200_050 0.1029827472 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000186_240 Hb_000186_240 Hb_000200_340 Hb_000200_340 Hb_000186_240--Hb_000200_340 Hb_000592_050 Hb_000592_050 Hb_000186_240--Hb_000592_050 Hb_000179_210 Hb_000179_210 Hb_000186_240--Hb_000179_210 Hb_010638_020 Hb_010638_020 Hb_000186_240--Hb_010638_020 Hb_000110_160 Hb_000110_160 Hb_000186_240--Hb_000110_160 Hb_010863_080 Hb_010863_080 Hb_000186_240--Hb_010863_080 Hb_001671_020 Hb_001671_020 Hb_000200_340--Hb_001671_020 Hb_189003_080 Hb_189003_080 Hb_000200_340--Hb_189003_080 Hb_000567_260 Hb_000567_260 Hb_000200_340--Hb_000567_260 Hb_000457_150 Hb_000457_150 Hb_000200_340--Hb_000457_150 Hb_055062_030 Hb_055062_030 Hb_000200_340--Hb_055062_030 Hb_000172_400 Hb_000172_400 Hb_000592_050--Hb_000172_400 Hb_000622_310 Hb_000622_310 Hb_000592_050--Hb_000622_310 Hb_000592_050--Hb_000179_210 Hb_000358_080 Hb_000358_080 Hb_000592_050--Hb_000358_080 Hb_010710_010 Hb_010710_010 Hb_000592_050--Hb_010710_010 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_010638_020--Hb_007575_040 Hb_182026_020 Hb_182026_020 Hb_010638_020--Hb_182026_020 Hb_001439_120 Hb_001439_120 Hb_010638_020--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_010638_020--Hb_011224_080 Hb_000556_080 Hb_000556_080 Hb_010638_020--Hb_000556_080 Hb_001329_300 Hb_001329_300 Hb_000110_160--Hb_001329_300 Hb_008066_010 Hb_008066_010 Hb_000110_160--Hb_008066_010 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000110_160--Hb_000567_260 Hb_000110_160--Hb_178968_110 Hb_010863_080--Hb_003297_030 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.12408 2.94352 2.07948 2.10318 9.81634 10.3698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53188 9.17343 14.5886 3.89001 1.17599

CAGE analysis