Hb_000187_020

Information

Type -
Description -
Location Contig187: 24813-35820
Sequence    

Annotation

kegg
ID tcc:TCM_007245
description Xanthine/uracil permease family protein isoform 1
nr
ID XP_007042667.1
description Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
swissprot
ID Q27GI3
description Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
trembl
ID A0A061E884
description Xanthine/uracil permease family protein isoform 1 OS=Theobroma cacao GN=TCM_007245 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18461: 24959-25705 , PASA_asmbl_18462: 35676-35828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000187_020 0.0 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
2 Hb_000445_320 0.0550070779 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
3 Hb_000375_200 0.0619127157 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
4 Hb_059832_010 0.0649575747 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
5 Hb_000193_170 0.0714546931 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
6 Hb_000130_400 0.0752947813 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
7 Hb_000051_130 0.0773803985 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_018663_010 0.0838434517 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
9 Hb_010737_030 0.0843847422 - - unnamed protein product [Vitis vinifera]
10 Hb_002453_040 0.0919603323 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
11 Hb_000496_100 0.0925800513 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
12 Hb_000120_260 0.0926762528 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
13 Hb_008226_050 0.0937430157 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
14 Hb_052530_010 0.0939583507 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
15 Hb_002205_220 0.0949962904 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
16 Hb_000436_110 0.0964062354 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
17 Hb_030545_020 0.0973150455 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003464_040 0.0993510859 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_000732_090 0.0998651398 - - cyclin d, putative [Ricinus communis]
20 Hb_004003_020 0.1038071822 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000187_020 Hb_000187_020 Hb_000445_320 Hb_000445_320 Hb_000187_020--Hb_000445_320 Hb_000375_200 Hb_000375_200 Hb_000187_020--Hb_000375_200 Hb_059832_010 Hb_059832_010 Hb_000187_020--Hb_059832_010 Hb_000193_170 Hb_000193_170 Hb_000187_020--Hb_000193_170 Hb_000130_400 Hb_000130_400 Hb_000187_020--Hb_000130_400 Hb_000051_130 Hb_000051_130 Hb_000187_020--Hb_000051_130 Hb_002453_040 Hb_002453_040 Hb_000445_320--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000445_320--Hb_052530_010 Hb_000445_320--Hb_059832_010 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020 Hb_000375_200--Hb_000193_170 Hb_018663_010 Hb_018663_010 Hb_000375_200--Hb_018663_010 Hb_000375_200--Hb_000130_400 Hb_003464_040 Hb_003464_040 Hb_000375_200--Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_000375_200--Hb_012368_040 Hb_059832_010--Hb_000130_400 Hb_000010_320 Hb_000010_320 Hb_059832_010--Hb_000010_320 Hb_059832_010--Hb_000375_200 Hb_158845_010 Hb_158845_010 Hb_059832_010--Hb_158845_010 Hb_000193_170--Hb_003464_040 Hb_000193_170--Hb_012368_040 Hb_000193_170--Hb_000130_400 Hb_000193_170--Hb_018663_010 Hb_000496_100 Hb_000496_100 Hb_000130_400--Hb_000496_100 Hb_028486_020 Hb_028486_020 Hb_000130_400--Hb_028486_020 Hb_000120_260 Hb_000120_260 Hb_000051_130--Hb_000120_260 Hb_010737_030 Hb_010737_030 Hb_000051_130--Hb_010737_030 Hb_000051_130--Hb_000496_100 Hb_000051_130--Hb_018663_010 Hb_000051_130--Hb_059832_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0333595 8.24241 2.12163 0 0.0097346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0459264 0 0 0.0359466 0.954163

CAGE analysis