Hb_000187_030

Information

Type -
Description -
Location Contig187: 41938-45703
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08990g
description POPTRDRAFT_804326; hypothetical protein
nr
ID XP_012093145.1
description PREDICTED: cyclin-D4-1-like isoform X2 [Jatropha curcas]
swissprot
ID P42751
description Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3
trembl
ID A0A067LJP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16352 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18464: 41983-43393 , PASA_asmbl_18465: 43529-45731
cDNA
(Sanger)
(ID:Location)		 045_M22.ab1: 44118-45487 , 045_O23.ab1: 44118-45426

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000187_030 0.0 - - PREDICTED: cyclin-D4-1-like isoform X2 [Jatropha curcas]
2 Hb_000152_150 0.1374593661 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
3 Hb_004724_220 0.1451750315 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
4 Hb_000617_310 0.1466886922 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
5 Hb_006261_090 0.156547403 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
6 Hb_004648_090 0.1593360506 - - peroxisomal biogenesis factor, putative [Ricinus communis]
7 Hb_001307_190 0.1673931725 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_000152_760 0.1742776068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000163_240 0.1803139657 - - PREDICTED: protein OPI10 homolog [Jatropha curcas]
10 Hb_001863_140 0.181918235 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
11 Hb_044155_010 0.1827808416 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
12 Hb_003746_030 0.1828915871 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
13 Hb_010998_040 0.1831641346 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
14 Hb_002897_070 0.1858001167 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
15 Hb_000979_060 0.1879905689 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
16 Hb_001277_360 0.188351725 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
17 Hb_000139_190 0.1901124484 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
18 Hb_000803_180 0.1907116325 - - hexokinase [Manihot esculenta]
19 Hb_005389_100 0.1907423425 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
20 Hb_003228_030 0.191655845 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000187_030 Hb_000187_030 Hb_000152_150 Hb_000152_150 Hb_000187_030--Hb_000152_150 Hb_004724_220 Hb_004724_220 Hb_000187_030--Hb_004724_220 Hb_000617_310 Hb_000617_310 Hb_000187_030--Hb_000617_310 Hb_006261_090 Hb_006261_090 Hb_000187_030--Hb_006261_090 Hb_004648_090 Hb_004648_090 Hb_000187_030--Hb_004648_090 Hb_001307_190 Hb_001307_190 Hb_000187_030--Hb_001307_190 Hb_000152_760 Hb_000152_760 Hb_000152_150--Hb_000152_760 Hb_006538_130 Hb_006538_130 Hb_000152_150--Hb_006538_130 Hb_006132_040 Hb_006132_040 Hb_000152_150--Hb_006132_040 Hb_002107_060 Hb_002107_060 Hb_000152_150--Hb_002107_060 Hb_003228_030 Hb_003228_030 Hb_000152_150--Hb_003228_030 Hb_001377_360 Hb_001377_360 Hb_004724_220--Hb_001377_360 Hb_000291_030 Hb_000291_030 Hb_004724_220--Hb_000291_030 Hb_005194_020 Hb_005194_020 Hb_004724_220--Hb_005194_020 Hb_004724_220--Hb_004648_090 Hb_000979_060 Hb_000979_060 Hb_004724_220--Hb_000979_060 Hb_004635_030 Hb_004635_030 Hb_004724_220--Hb_004635_030 Hb_000617_310--Hb_001307_190 Hb_001863_140 Hb_001863_140 Hb_000617_310--Hb_001863_140 Hb_039021_010 Hb_039021_010 Hb_000617_310--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_000617_310--Hb_000345_510 Hb_004096_160 Hb_004096_160 Hb_000617_310--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_000617_310--Hb_002909_040 Hb_001898_240 Hb_001898_240 Hb_006261_090--Hb_001898_240 Hb_002228_110 Hb_002228_110 Hb_006261_090--Hb_002228_110 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_006261_090--Hb_004648_090 Hb_004128_200 Hb_004128_200 Hb_006261_090--Hb_004128_200 Hb_001671_040 Hb_001671_040 Hb_006261_090--Hb_001671_040 Hb_004870_050 Hb_004870_050 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_004648_090--Hb_002228_110 Hb_005389_100 Hb_005389_100 Hb_004648_090--Hb_005389_100 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_004648_090--Hb_001671_040 Hb_014231_020 Hb_014231_020 Hb_001307_190--Hb_014231_020 Hb_000703_160 Hb_000703_160 Hb_001307_190--Hb_000703_160 Hb_000958_080 Hb_000958_080 Hb_001307_190--Hb_000958_080 Hb_005144_210 Hb_005144_210 Hb_001307_190--Hb_005144_210 Hb_009449_060 Hb_009449_060 Hb_001307_190--Hb_009449_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0128 20.9725 27.1344 10.8243 21.9802 2.07239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3776 9.83738 4.0697 6.57797 2.992

CAGE analysis