Hb_000187_050

Information

Type -
Description -
Location Contig187: 74987-75812
Sequence    

Annotation

kegg
ID rcu:RCOM_1384530
description hypothetical protein
nr
ID XP_012093149.1
description PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16354 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18468: 74656-76173
cDNA
(Sanger)
(ID:Location)		 024_G13.ab1: 74656-75146

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000187_050 0.0 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
2 Hb_159809_040 0.0812102606 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002686_320 0.0878680179 - - syntaxin, putative [Ricinus communis]
4 Hb_011501_010 0.0879927815 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
5 Hb_000538_290 0.09224411 - - hypothetical protein RCOM_0303940 [Ricinus communis]
6 Hb_000977_190 0.0947479347 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009113_020 0.0959559435 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
8 Hb_001971_040 0.108037323 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
9 Hb_005332_030 0.1090967739 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000359_100 0.1093239465 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006810_040 0.1096800171 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_000345_230 0.1121789628 - - -
13 Hb_001348_100 0.1136489003 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
14 Hb_006693_010 0.1153115473 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
15 Hb_002836_110 0.1162453518 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
16 Hb_000701_020 0.116622667 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
17 Hb_005181_170 0.1172766144 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
18 Hb_003750_090 0.1172890792 - - BnaC02g34020D [Brassica napus]
19 Hb_000522_160 0.1175056964 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_001623_250 0.1214011698 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000187_050 Hb_000187_050 Hb_159809_040 Hb_159809_040 Hb_000187_050--Hb_159809_040 Hb_002686_320 Hb_002686_320 Hb_000187_050--Hb_002686_320 Hb_011501_010 Hb_011501_010 Hb_000187_050--Hb_011501_010 Hb_000538_290 Hb_000538_290 Hb_000187_050--Hb_000538_290 Hb_000977_190 Hb_000977_190 Hb_000187_050--Hb_000977_190 Hb_009113_020 Hb_009113_020 Hb_000187_050--Hb_009113_020 Hb_005332_030 Hb_005332_030 Hb_159809_040--Hb_005332_030 Hb_006810_040 Hb_006810_040 Hb_159809_040--Hb_006810_040 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_000522_160 Hb_000522_160 Hb_159809_040--Hb_000522_160 Hb_159809_040--Hb_000977_190 Hb_002686_320--Hb_009113_020 Hb_002686_320--Hb_000977_190 Hb_002686_320--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_002686_320--Hb_009545_060 Hb_000701_020 Hb_000701_020 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_000563_470 Hb_000563_470 Hb_011501_010--Hb_000563_470 Hb_011501_010--Hb_009113_020 Hb_003750_090 Hb_003750_090 Hb_011501_010--Hb_003750_090 Hb_001863_330 Hb_001863_330 Hb_011501_010--Hb_001863_330 Hb_011501_010--Hb_002686_320 Hb_000538_290--Hb_009113_020 Hb_000538_290--Hb_006810_040 Hb_000538_290--Hb_000701_020 Hb_000538_290--Hb_000977_190 Hb_000977_190--Hb_005332_030 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_009113_020--Hb_009545_060 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0695926 2.97434 2.90874 0 0.0589345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.398446 0.58338

CAGE analysis