Hb_000187_090

Information

Type -
Description -
Location Contig187: 117241-119679
Sequence    

Annotation

kegg
ID cic:CICLE_v10028291mg
description hypothetical protein
nr
ID XP_012093151.1
description PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
swissprot
ID Q9LJN2
description Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=2 SV=1
trembl
ID A0A067LBA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16356 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000187_090 0.0 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
2 Hb_000041_150 0.1100794543 - - Stachyose synthase precursor, putative [Ricinus communis]
3 Hb_001221_170 0.1226260783 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
4 Hb_003878_120 0.1226828946 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
5 Hb_153258_010 0.1334313309 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
6 Hb_000463_140 0.1514939399 - - Poly(rC)-binding protein, putative [Ricinus communis]
7 Hb_006111_070 0.1560079462 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
8 Hb_002255_070 0.1575059369 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
9 Hb_033834_010 0.1579694574 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_007304_110 0.1595589055 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
11 Hb_019654_100 0.1610475015 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
12 Hb_000406_040 0.1612703353 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
13 Hb_127003_010 0.1625496352 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
14 Hb_140171_010 0.1641496916 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
15 Hb_000532_020 0.1659480434 - - beta-tubulin [Bouteloua eriopoda]
16 Hb_000330_050 0.1659569968 - - Protein yrdA, putative [Ricinus communis]
17 Hb_046198_010 0.1661229895 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
18 Hb_004440_100 0.1662570572 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
19 Hb_005730_030 0.1673195148 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
20 Hb_008247_010 0.1694752706 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_000187_090 Hb_000187_090 Hb_000041_150 Hb_000041_150 Hb_000187_090--Hb_000041_150 Hb_001221_170 Hb_001221_170 Hb_000187_090--Hb_001221_170 Hb_003878_120 Hb_003878_120 Hb_000187_090--Hb_003878_120 Hb_153258_010 Hb_153258_010 Hb_000187_090--Hb_153258_010 Hb_000463_140 Hb_000463_140 Hb_000187_090--Hb_000463_140 Hb_006111_070 Hb_006111_070 Hb_000187_090--Hb_006111_070 Hb_000041_150--Hb_153258_010 Hb_127003_010 Hb_127003_010 Hb_000041_150--Hb_127003_010 Hb_000997_210 Hb_000997_210 Hb_000041_150--Hb_000997_210 Hb_000041_150--Hb_001221_170 Hb_000120_050 Hb_000120_050 Hb_000041_150--Hb_000120_050 Hb_019654_100 Hb_019654_100 Hb_001221_170--Hb_019654_100 Hb_001221_170--Hb_153258_010 Hb_010795_010 Hb_010795_010 Hb_001221_170--Hb_010795_010 Hb_003862_050 Hb_003862_050 Hb_001221_170--Hb_003862_050 Hb_001245_070 Hb_001245_070 Hb_001221_170--Hb_001245_070 Hb_000742_250 Hb_000742_250 Hb_003878_120--Hb_000742_250 Hb_006649_080 Hb_006649_080 Hb_003878_120--Hb_006649_080 Hb_003878_120--Hb_000041_150 Hb_000364_180 Hb_000364_180 Hb_003878_120--Hb_000364_180 Hb_003878_120--Hb_153258_010 Hb_007558_140 Hb_007558_140 Hb_153258_010--Hb_007558_140 Hb_153258_010--Hb_000120_050 Hb_153258_010--Hb_000997_210 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130 Hb_000041_280 Hb_000041_280 Hb_000463_140--Hb_000041_280 Hb_000514_060 Hb_000514_060 Hb_000463_140--Hb_000514_060 Hb_004117_100 Hb_004117_100 Hb_000463_140--Hb_004117_100 Hb_001243_040 Hb_001243_040 Hb_000463_140--Hb_001243_040 Hb_000574_440 Hb_000574_440 Hb_000463_140--Hb_000574_440 Hb_002025_020 Hb_002025_020 Hb_000463_140--Hb_002025_020 Hb_015884_030 Hb_015884_030 Hb_006111_070--Hb_015884_030 Hb_006111_070--Hb_000463_140 Hb_000062_150 Hb_000062_150 Hb_006111_070--Hb_000062_150 Hb_024570_010 Hb_024570_010 Hb_006111_070--Hb_024570_010 Hb_012799_030 Hb_012799_030 Hb_006111_070--Hb_012799_030 Hb_000313_060 Hb_000313_060 Hb_006111_070--Hb_000313_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84208 2.70426 3.88742 0.82667 8.72948 4.43415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.20715 1.95237 10.3829 2.43799 1.95632

CAGE analysis