Hb_000187_110

Information

Type -
Description -
Location Contig187: 144301-191741
Sequence    

Annotation

kegg
ID pda:103707552
description uncharacterized LOC103707552
nr
ID XP_012093160.1
description PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
swissprot
ID Q9C7Z9
description Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2
trembl
ID A0A067LJR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16367 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18470: 156365-157685 , PASA_asmbl_18471: 158921-159505 , PASA_asmbl_18472: 158955-162167 , PASA_asmbl_18473: 178446-179606 , PASA_asmbl_18474: 188435-189584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000187_110 0.0 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
2 Hb_000161_230 0.0653392573 - - lactoylglutathione lyase, putative [Ricinus communis]
3 Hb_000979_080 0.1015625118 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
4 Hb_001002_090 0.1084350387 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
5 Hb_003226_050 0.1213895081 - - Pectinesterase-3 precursor, putative [Ricinus communis]
6 Hb_055440_010 0.1282161733 - - protein binding protein, putative [Ricinus communis]
7 Hb_001633_120 0.1311219625 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
8 Hb_001158_110 0.1331768832 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
9 Hb_000544_130 0.1337672456 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
10 Hb_021888_010 0.1360235202 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
11 Hb_000086_720 0.1400471495 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_002437_010 0.1425736143 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
13 Hb_006834_010 0.1472556254 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003768_100 0.1478685231 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
15 Hb_004984_020 0.1478898799 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
16 Hb_000364_130 0.1514833729 - - unnamed protein product [Vitis vinifera]
17 Hb_178252_010 0.1523343144 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
18 Hb_002809_020 0.1546385913 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
19 Hb_072997_010 0.1583736807 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
20 Hb_002559_010 0.165815956 - - hypothetical protein JCGZ_06274 [Jatropha curcas]

Gene co-expression network

sample Hb_000187_110 Hb_000187_110 Hb_000161_230 Hb_000161_230 Hb_000187_110--Hb_000161_230 Hb_000979_080 Hb_000979_080 Hb_000187_110--Hb_000979_080 Hb_001002_090 Hb_001002_090 Hb_000187_110--Hb_001002_090 Hb_003226_050 Hb_003226_050 Hb_000187_110--Hb_003226_050 Hb_055440_010 Hb_055440_010 Hb_000187_110--Hb_055440_010 Hb_001633_120 Hb_001633_120 Hb_000187_110--Hb_001633_120 Hb_000544_130 Hb_000544_130 Hb_000161_230--Hb_000544_130 Hb_000161_230--Hb_001633_120 Hb_000161_230--Hb_003226_050 Hb_001158_110 Hb_001158_110 Hb_000161_230--Hb_001158_110 Hb_003020_340 Hb_003020_340 Hb_000161_230--Hb_003020_340 Hb_000979_080--Hb_001002_090 Hb_003768_100 Hb_003768_100 Hb_000979_080--Hb_003768_100 Hb_000979_080--Hb_003226_050 Hb_000979_080--Hb_055440_010 Hb_001053_110 Hb_001053_110 Hb_000979_080--Hb_001053_110 Hb_001002_090--Hb_055440_010 Hb_072997_010 Hb_072997_010 Hb_001002_090--Hb_072997_010 Hb_009767_030 Hb_009767_030 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070 Hb_000364_130 Hb_000364_130 Hb_003226_050--Hb_000364_130 Hb_003226_050--Hb_003768_100 Hb_003226_050--Hb_000544_130 Hb_055440_010--Hb_072997_010 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_004096_010 Hb_004096_010 Hb_055440_010--Hb_004096_010 Hb_000705_110 Hb_000705_110 Hb_001633_120--Hb_000705_110 Hb_002437_010 Hb_002437_010 Hb_001633_120--Hb_002437_010 Hb_001242_020 Hb_001242_020 Hb_001633_120--Hb_001242_020 Hb_001633_120--Hb_003226_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.292058 1.71854 1.99435 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00630746 0.00992822 0.00958131 3.33478 0.0855648

CAGE analysis