Hb_000188_040

Information

Type -
Description -
Location Contig188: 60172-61078
Sequence    

Annotation

kegg
ID fve:101298622
description uncharacterized protein LOC101298622
nr
ID XP_012066520.1
description PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067F127
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044600mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18540: 61841-61991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000188_040 0.0 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
2 Hb_002031_020 0.0795517081 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
3 Hb_180518_010 0.079951097 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
4 Hb_001454_350 0.0830510058 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
5 Hb_005291_020 0.0862157298 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000462_120 0.0941406868 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
7 Hb_006252_070 0.0943581408 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
8 Hb_025557_080 0.0966745809 transcription factor TF Family: zf-HD -
9 Hb_000497_030 0.0967958027 - - -
10 Hb_027577_010 0.0994591142 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
11 Hb_000581_010 0.1000282306 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
12 Hb_000327_350 0.1002652729 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
13 Hb_000645_230 0.1012574599 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
14 Hb_002014_130 0.1018811772 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000291_240 0.1028627039 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
16 Hb_003580_020 0.1032782313 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002785_020 0.1035932377 - - PREDICTED: laccase-4-like [Jatropha curcas]
18 Hb_003638_020 0.1044619359 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
19 Hb_000487_350 0.1053743865 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000339_060 0.1058160095 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000188_040 Hb_000188_040 Hb_002031_020 Hb_002031_020 Hb_000188_040--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000188_040--Hb_180518_010 Hb_001454_350 Hb_001454_350 Hb_000188_040--Hb_001454_350 Hb_005291_020 Hb_005291_020 Hb_000188_040--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_000188_040--Hb_000462_120 Hb_006252_070 Hb_006252_070 Hb_000188_040--Hb_006252_070 Hb_000581_010 Hb_000581_010 Hb_002031_020--Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_002031_020--Hb_000487_350 Hb_002031_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_002031_020--Hb_027577_010 Hb_188281_020 Hb_188281_020 Hb_002031_020--Hb_188281_020 Hb_180518_010--Hb_027577_010 Hb_180518_010--Hb_000581_010 Hb_180518_010--Hb_000487_350 Hb_180518_010--Hb_005291_020 Hb_103468_010 Hb_103468_010 Hb_180518_010--Hb_103468_010 Hb_004158_040 Hb_004158_040 Hb_001454_350--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_001454_350--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_001454_350--Hb_001722_110 Hb_010217_020 Hb_010217_020 Hb_001454_350--Hb_010217_020 Hb_009421_060 Hb_009421_060 Hb_001454_350--Hb_009421_060 Hb_003580_020 Hb_003580_020 Hb_005291_020--Hb_003580_020 Hb_005291_020--Hb_000462_120 Hb_002014_130 Hb_002014_130 Hb_005291_020--Hb_002014_130 Hb_005291_020--Hb_027577_010 Hb_000497_030 Hb_000497_030 Hb_005291_020--Hb_000497_030 Hb_005616_020 Hb_005616_020 Hb_000462_120--Hb_005616_020 Hb_000462_120--Hb_003580_020 Hb_000729_040 Hb_000729_040 Hb_000462_120--Hb_000729_040 Hb_001456_030 Hb_001456_030 Hb_000462_120--Hb_001456_030 Hb_000462_120--Hb_027577_010 Hb_000991_060 Hb_000991_060 Hb_006252_070--Hb_000991_060 Hb_000020_140 Hb_000020_140 Hb_006252_070--Hb_000020_140 Hb_006252_070--Hb_001454_350 Hb_006252_070--Hb_002014_130 Hb_000291_240 Hb_000291_240 Hb_006252_070--Hb_000291_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.53368 2.58933 67.1094 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.22222 15.7101

CAGE analysis