Hb_000188_070

Information

Type -
Description -
Location Contig188: 83916-88980
Sequence    

Annotation

kegg
ID tcc:TCM_022544
description Purple acid phosphatase 21
nr
ID AGL44400.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q8S340
description Purple acid phosphatase 22 OS=Arabidopsis thaliana GN=PAP22 PE=2 SV=1
trembl
ID V9NCA3
description Purple acid phosphatase OS=Manihot esculenta GN=PAP22 PE=2 SV=1
Gene Ontology
ID GO:0003993
description purple acid phosphatase 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18544: 87503-87609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000188_070 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_033834_020 0.0466382073 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000692_060 0.0487668986 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_001958_030 0.0521309654 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_007254_010 0.0722554622 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
6 Hb_001638_190 0.0876746363 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
7 Hb_000928_100 0.0885471715 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
8 Hb_022167_010 0.0887503195 - - Kinase, putative isoform 2 [Theobroma cacao]
9 Hb_002710_040 0.090206878 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
10 Hb_046590_010 0.0936368603 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
11 Hb_002918_170 0.1000055515 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
12 Hb_000236_130 0.1009179656 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
13 Hb_005116_130 0.1039830364 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
14 Hb_003387_010 0.1041938498 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
15 Hb_000294_020 0.104416218 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
16 Hb_001655_080 0.1079995701 - - Purple acid phosphatase precursor, putative [Ricinus communis]
17 Hb_092516_010 0.1097920494 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
18 Hb_163950_090 0.1106354239 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
19 Hb_001544_060 0.1156513132 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
20 Hb_104014_010 0.1161957979 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000188_070 Hb_000188_070 Hb_033834_020 Hb_033834_020 Hb_000188_070--Hb_033834_020 Hb_000692_060 Hb_000692_060 Hb_000188_070--Hb_000692_060 Hb_001958_030 Hb_001958_030 Hb_000188_070--Hb_001958_030 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_001638_190 Hb_001638_190 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_033834_020--Hb_000692_060 Hb_033834_020--Hb_007254_010 Hb_022167_010 Hb_022167_010 Hb_033834_020--Hb_022167_010 Hb_033834_020--Hb_000928_100 Hb_033834_020--Hb_001958_030 Hb_000692_060--Hb_007254_010 Hb_000692_060--Hb_001958_030 Hb_000236_130 Hb_000236_130 Hb_000692_060--Hb_000236_130 Hb_000692_060--Hb_022167_010 Hb_002710_040 Hb_002710_040 Hb_001958_030--Hb_002710_040 Hb_001958_030--Hb_001638_190 Hb_003387_010 Hb_003387_010 Hb_001958_030--Hb_003387_010 Hb_007254_010--Hb_000928_100 Hb_007254_010--Hb_022167_010 Hb_003777_090 Hb_003777_090 Hb_007254_010--Hb_003777_090 Hb_000345_400 Hb_000345_400 Hb_001638_190--Hb_000345_400 Hb_001638_190--Hb_000692_060 Hb_001655_080 Hb_001655_080 Hb_001638_190--Hb_001655_080 Hb_000358_160 Hb_000358_160 Hb_001638_190--Hb_000358_160 Hb_000928_100--Hb_022167_010 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_001916_110 Hb_001916_110 Hb_000928_100--Hb_001916_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0244078 21.5434 206.393 33.7966 0.0114274 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305531 0.0874115 0.206045 9.81765 86.158

CAGE analysis