Hb_000188_100

Information

Type -
Description -
Location Contig188: 145775-146533
Sequence    

Annotation

kegg
ID rcu:RCOM_0516610
description golgi membrane protein sb140, putative
nr
ID XP_012066485.1
description PREDICTED: protein YIPF5 homolog [Jatropha curcas]
swissprot
ID Q9JIM5
description Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1
trembl
ID B9SRV9
description Protein YIPF OS=Ricinus communis GN=RCOM_0516610 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein yipf5 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18546: 145662-146714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000188_100 0.0 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
2 Hb_000787_110 0.0601485399 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
3 Hb_003120_060 0.067234401 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
4 Hb_000019_230 0.0692163993 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_003038_030 0.0812883234 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
6 Hb_079820_010 0.081309189 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
7 Hb_000386_040 0.0815265594 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_004195_160 0.0853314784 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
9 Hb_003551_020 0.0861009414 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
10 Hb_010710_110 0.0880678548 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
11 Hb_000398_180 0.0892913326 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
12 Hb_000943_070 0.0915601725 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
13 Hb_001214_130 0.0916905824 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
14 Hb_001913_010 0.0937426428 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
15 Hb_001243_050 0.094269469 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
16 Hb_006447_010 0.0948297926 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
17 Hb_000009_550 0.094831808 - - hypothetical protein RCOM_0603640 [Ricinus communis]
18 Hb_001246_100 0.0948462473 - - Ras-related small GTP-binding family protein [Theobroma cacao]
19 Hb_000923_020 0.0948569353 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
20 Hb_000162_090 0.0957580581 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000188_100 Hb_000188_100 Hb_000787_110 Hb_000787_110 Hb_000188_100--Hb_000787_110 Hb_003120_060 Hb_003120_060 Hb_000188_100--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_000188_100--Hb_000019_230 Hb_003038_030 Hb_003038_030 Hb_000188_100--Hb_003038_030 Hb_079820_010 Hb_079820_010 Hb_000188_100--Hb_079820_010 Hb_000386_040 Hb_000386_040 Hb_000188_100--Hb_000386_040 Hb_010710_110 Hb_010710_110 Hb_000787_110--Hb_010710_110 Hb_000554_020 Hb_000554_020 Hb_000787_110--Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_000787_110--Hb_000406_220 Hb_002810_020 Hb_002810_020 Hb_000787_110--Hb_002810_020 Hb_001488_330 Hb_001488_330 Hb_000787_110--Hb_001488_330 Hb_003120_060--Hb_000019_230 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003120_060--Hb_003038_030 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_000019_230--Hb_003038_030 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_079820_010--Hb_002411_170 Hb_079820_010--Hb_003038_030 Hb_079820_010--Hb_000386_040 Hb_006447_010 Hb_006447_010 Hb_079820_010--Hb_006447_010 Hb_079820_010--Hb_003120_060 Hb_000049_040 Hb_000049_040 Hb_000386_040--Hb_000049_040 Hb_000386_040--Hb_003038_030 Hb_000943_070 Hb_000943_070 Hb_000386_040--Hb_000943_070 Hb_001246_100 Hb_001246_100 Hb_000386_040--Hb_001246_100 Hb_000386_040--Hb_000172_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.781 30.4712 11.5223 20.5166 58.9928 80.6787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.0906 67.4074 49.9011 10.7128 12.0479

CAGE analysis