Hb_000188_130

Information

Type -
Description -
Location Contig188: 200925-208866
Sequence    

Annotation

kegg
ID cit:102628744
description hypothetical protein
nr
ID XP_006481790.1
description PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067F4T5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016533mg PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18547: 200953-208803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000188_130 0.0 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
2 Hb_001341_130 0.0613302778 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000045_190 0.0896795807 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
4 Hb_002759_230 0.0926987344 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
5 Hb_001153_080 0.100293779 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
6 Hb_001045_080 0.1069496124 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
7 Hb_002529_100 0.1086040989 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
8 Hb_000046_260 0.1090205988 - - acyl carrier protein, putative [Ricinus communis]
9 Hb_004116_080 0.1135598645 - - ATATH9, putative [Ricinus communis]
10 Hb_007140_020 0.1141726733 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
11 Hb_010172_070 0.1162005956 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
12 Hb_003581_090 0.1163159547 - - PREDICTED: galactose oxidase [Jatropha curcas]
13 Hb_000922_170 0.1175027505 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
14 Hb_000798_030 0.1179550625 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
15 Hb_002027_400 0.1243395235 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
16 Hb_000051_040 0.1249736978 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
17 Hb_000012_130 0.1263314957 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
18 Hb_003125_150 0.1264910726 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
19 Hb_002909_060 0.1266167565 - - 3-5 exonuclease, putative [Ricinus communis]
20 Hb_000634_050 0.1276524716 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]

Gene co-expression network

sample Hb_000188_130 Hb_000188_130 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000045_190 Hb_000045_190 Hb_000188_130--Hb_000045_190 Hb_002759_230 Hb_002759_230 Hb_000188_130--Hb_002759_230 Hb_001153_080 Hb_001153_080 Hb_000188_130--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000188_130--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000188_130--Hb_002529_100 Hb_001341_130--Hb_001153_080 Hb_001341_130--Hb_000045_190 Hb_001341_130--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_001341_130--Hb_003581_090 Hb_001341_130--Hb_002759_230 Hb_000634_050 Hb_000634_050 Hb_000045_190--Hb_000634_050 Hb_000798_030 Hb_000798_030 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_000045_190--Hb_001153_080 Hb_000045_190--Hb_001045_080 Hb_000045_190--Hb_002529_100 Hb_000212_260 Hb_000212_260 Hb_002759_230--Hb_000212_260 Hb_002909_060 Hb_002909_060 Hb_002759_230--Hb_002909_060 Hb_000099_060 Hb_000099_060 Hb_002759_230--Hb_000099_060 Hb_001912_010 Hb_001912_010 Hb_002759_230--Hb_001912_010 Hb_002759_230--Hb_003581_090 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.2074 11.5451 19.9651 10.3386 24.8896 25.7147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.648 98.1469 51.9164 15.8359 4.58406

CAGE analysis