Hb_000188_140

Information

Type -
Description -
Location Contig188: 209898-210563
Sequence    

Annotation

kegg
ID rcu:RCOM_0516660
description Oxalate oxidase 2 precursor, putative (EC:1.2.3.4)
nr
ID XP_012066488.1
description PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
swissprot
ID Q9SR72
description Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1
trembl
ID A0A067L2X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23677 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 3 member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18548: 209755-210599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000188_140 0.0 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
2 Hb_000152_630 0.0319212121 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
3 Hb_000230_220 0.0758962796 - - conserved hypothetical protein [Ricinus communis]
4 Hb_069384_010 0.0822813687 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
5 Hb_000186_090 0.085050331 - - ACC oxidase 1 [Hevea brasiliensis]
6 Hb_000087_160 0.0937825344 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_084304_010 0.0938835335 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
8 Hb_006351_050 0.0990101007 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
9 Hb_000579_210 0.1008034763 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
10 Hb_004102_180 0.1012512479 - - zinc finger family protein [Populus trichocarpa]
11 Hb_003197_050 0.1043616915 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
12 Hb_003777_150 0.1048901974 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
13 Hb_116349_080 0.1049775712 - - Nectarin-1 precursor, putative [Ricinus communis]
14 Hb_000959_170 0.105763087 - - Cell division protein kinase 7, putative [Ricinus communis]
15 Hb_187906_010 0.1065417332 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
16 Hb_001500_020 0.1099175825 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_011218_010 0.1112954502 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
18 Hb_000497_080 0.1125115761 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002030_190 0.1130758474 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000920_120 0.1149449604 - - -

Gene co-expression network

sample Hb_000188_140 Hb_000188_140 Hb_000152_630 Hb_000152_630 Hb_000188_140--Hb_000152_630 Hb_000230_220 Hb_000230_220 Hb_000188_140--Hb_000230_220 Hb_069384_010 Hb_069384_010 Hb_000188_140--Hb_069384_010 Hb_000186_090 Hb_000186_090 Hb_000188_140--Hb_000186_090 Hb_000087_160 Hb_000087_160 Hb_000188_140--Hb_000087_160 Hb_084304_010 Hb_084304_010 Hb_000188_140--Hb_084304_010 Hb_000152_630--Hb_000230_220 Hb_000152_630--Hb_069384_010 Hb_004102_180 Hb_004102_180 Hb_000152_630--Hb_004102_180 Hb_000152_630--Hb_000087_160 Hb_116349_080 Hb_116349_080 Hb_000152_630--Hb_116349_080 Hb_003197_050 Hb_003197_050 Hb_000230_220--Hb_003197_050 Hb_000230_220--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_000230_220--Hb_000155_030 Hb_025557_090 Hb_025557_090 Hb_000230_220--Hb_025557_090 Hb_069384_010--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_069384_010--Hb_011218_010 Hb_069384_010--Hb_000186_090 Hb_007290_010 Hb_007290_010 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_029508_040 Hb_029508_040 Hb_000186_090--Hb_029508_040 Hb_000710_130 Hb_000710_130 Hb_000186_090--Hb_000710_130 Hb_074100_010 Hb_074100_010 Hb_000186_090--Hb_074100_010 Hb_002277_020 Hb_002277_020 Hb_000186_090--Hb_002277_020 Hb_000959_170 Hb_000959_170 Hb_000087_160--Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000087_160--Hb_159791_010 Hb_011930_090 Hb_011930_090 Hb_000087_160--Hb_011930_090 Hb_187906_010 Hb_187906_010 Hb_000087_160--Hb_187906_010 Hb_019299_010 Hb_019299_010 Hb_000087_160--Hb_019299_010 Hb_000087_160--Hb_000230_220 Hb_003427_070 Hb_003427_070 Hb_084304_010--Hb_003427_070 Hb_003777_150 Hb_003777_150 Hb_084304_010--Hb_003777_150 Hb_006351_050 Hb_006351_050 Hb_084304_010--Hb_006351_050 Hb_001500_020 Hb_001500_020 Hb_084304_010--Hb_001500_020 Hb_000739_190 Hb_000739_190 Hb_084304_010--Hb_000739_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.639778 9.4414 10.9915 89.9775 0.409914 0.152903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.417232 4.82532

CAGE analysis