Hb_000188_190

Information

Type -
Description -
Location Contig188: 284113-285618
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000188_190 0.0 - - -
2 Hb_000015_010 0.0868652679 - - -
3 Hb_005015_010 0.0877847893 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
4 Hb_004374_010 0.0879109543 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
5 Hb_005714_040 0.1088939741 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004032_460 0.1107683315 - - -
7 Hb_002728_020 0.1123864147 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
8 Hb_000088_180 0.1126149659 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
9 Hb_000183_070 0.1134355253 - - -
10 Hb_009801_010 0.1142632954 - - ATPase inhibitor, putative [Ricinus communis]
11 Hb_000062_230 0.1163787611 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
12 Hb_001195_030 0.1192725508 - - auxilin, putative [Ricinus communis]
13 Hb_001776_080 0.1194257209 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
14 Hb_001956_120 0.1199261978 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001437_300 0.1221329697 - - -
16 Hb_000173_370 0.1228720968 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
17 Hb_005389_140 0.1229116052 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
18 Hb_012807_120 0.1259938528 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_006478_070 0.126067265 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
20 Hb_000038_130 0.126862143 - - -

Gene co-expression network

sample Hb_000188_190 Hb_000188_190 Hb_000015_010 Hb_000015_010 Hb_000188_190--Hb_000015_010 Hb_005015_010 Hb_005015_010 Hb_000188_190--Hb_005015_010 Hb_004374_010 Hb_004374_010 Hb_000188_190--Hb_004374_010 Hb_005714_040 Hb_005714_040 Hb_000188_190--Hb_005714_040 Hb_004032_460 Hb_004032_460 Hb_000188_190--Hb_004032_460 Hb_002728_020 Hb_002728_020 Hb_000188_190--Hb_002728_020 Hb_000015_010--Hb_004374_010 Hb_000284_200 Hb_000284_200 Hb_000015_010--Hb_000284_200 Hb_002044_090 Hb_002044_090 Hb_000015_010--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_000015_010--Hb_000062_230 Hb_160818_010 Hb_160818_010 Hb_000015_010--Hb_160818_010 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_000183_070 Hb_000183_070 Hb_005015_010--Hb_000183_070 Hb_005015_010--Hb_005714_040 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_005015_010--Hb_004374_010 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040 Hb_005714_040--Hb_000183_070 Hb_005389_140 Hb_005389_140 Hb_005714_040--Hb_005389_140 Hb_000590_090 Hb_000590_090 Hb_005714_040--Hb_000590_090 Hb_006452_190 Hb_006452_190 Hb_005714_040--Hb_006452_190 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_002728_020--Hb_000173_370 Hb_001348_140 Hb_001348_140 Hb_002728_020--Hb_001348_140 Hb_089140_080 Hb_089140_080 Hb_002728_020--Hb_089140_080 Hb_000692_170 Hb_000692_170 Hb_002728_020--Hb_000692_170 Hb_002025_140 Hb_002025_140 Hb_002728_020--Hb_002025_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
170.482 19.0549 12.7935 4.69024 173.789 99.0571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.3723 52.9868 26.3922 21.5635 15.2901

CAGE analysis