Hb_000189_100

Information

Type -
Description -
Location Contig189: 117787-127553
Sequence    

Annotation

kegg
ID vvi:100267561
description mediator of RNA polymerase II transcription subunit 14
nr
ID XP_012089264.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
swissprot
ID Q9SR02
description Mediator of RNA polymerase II transcription subunit 14 OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
trembl
ID A0A067JUK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23498 PE=4 SV=1
Gene Ontology
ID GO:0009506
description mediator of rna polymerase ii transcription subunit 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18643: 118003-121413 , PASA_asmbl_18644: 121437-123954 , PASA_asmbl_18645: 123716-127546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_100 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
2 Hb_006663_040 0.0643647225 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
3 Hb_000327_280 0.0794337272 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
4 Hb_018133_050 0.0828661445 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
5 Hb_000832_320 0.0838511067 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
6 Hb_052764_060 0.0847374816 - - XPA-binding protein, putative [Ricinus communis]
7 Hb_000061_510 0.0868366253 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
8 Hb_000321_150 0.0913556767 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
9 Hb_000836_020 0.0917659717 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
10 Hb_014834_060 0.0949932009 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
11 Hb_000896_060 0.0961226376 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_157966_010 0.0969322842 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
13 Hb_174865_020 0.0987268141 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
14 Hb_003729_030 0.099521788 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
15 Hb_000949_010 0.1000528968 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
16 Hb_005539_090 0.1024537354 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
17 Hb_011947_050 0.1042638604 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
18 Hb_003060_090 0.1045269276 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
19 Hb_000120_660 0.1045306993 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
20 Hb_003284_030 0.1045939586 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_100 Hb_000189_100 Hb_006663_040 Hb_006663_040 Hb_000189_100--Hb_006663_040 Hb_000327_280 Hb_000327_280 Hb_000189_100--Hb_000327_280 Hb_018133_050 Hb_018133_050 Hb_000189_100--Hb_018133_050 Hb_000832_320 Hb_000832_320 Hb_000189_100--Hb_000832_320 Hb_052764_060 Hb_052764_060 Hb_000189_100--Hb_052764_060 Hb_000061_510 Hb_000061_510 Hb_000189_100--Hb_000061_510 Hb_006663_040--Hb_052764_060 Hb_006663_040--Hb_000832_320 Hb_006663_040--Hb_018133_050 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_000544_060 Hb_000544_060 Hb_006663_040--Hb_000544_060 Hb_000327_280--Hb_006663_040 Hb_000120_660 Hb_000120_660 Hb_000327_280--Hb_000120_660 Hb_000327_280--Hb_157966_010 Hb_000327_280--Hb_000832_320 Hb_003729_030 Hb_003729_030 Hb_000327_280--Hb_003729_030 Hb_018133_050--Hb_157966_010 Hb_018133_050--Hb_000832_320 Hb_018133_050--Hb_052764_060 Hb_000959_040 Hb_000959_040 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_004480_040 Hb_004480_040 Hb_000832_320--Hb_004480_040 Hb_000832_320--Hb_052764_060 Hb_000832_320--Hb_000544_060 Hb_000832_320--Hb_000959_040 Hb_000661_200 Hb_000661_200 Hb_052764_060--Hb_000661_200 Hb_052764_060--Hb_000544_060 Hb_052764_060--Hb_004480_040 Hb_002095_070 Hb_002095_070 Hb_000061_510--Hb_002095_070 Hb_001027_010 Hb_001027_010 Hb_000061_510--Hb_001027_010 Hb_000206_040 Hb_000206_040 Hb_000061_510--Hb_000206_040 Hb_003211_040 Hb_003211_040 Hb_000061_510--Hb_003211_040 Hb_000836_020 Hb_000836_020 Hb_000061_510--Hb_000836_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6654 45.9063 7.37861 10.6471 18.1659 22.4661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84067 5.25492 14.3353 17.2034 16.1549

CAGE analysis