Hb_000189_150

Information

Type transcription factor
Description TF Family: bZIP
Location Contig189: 153173-158074
Sequence    

Annotation

kegg
ID rcu:RCOM_0484650
description Light-inducible protein CPRF-2, putative
nr
ID XP_012089255.1
description PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
swissprot
ID Q99090
description Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2
trembl
ID A0A067JI80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23494 PE=4 SV=1
Gene Ontology
ID GO:0005488
description light-inducible protein cprf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18654: 153177-154312 , PASA_asmbl_18655: 155237-158177
cDNA
(Sanger)
(ID:Location)		 016_C15.ab1: 155287-158177

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_150 0.0 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
2 Hb_000431_150 0.0962889104 - - ribosomal protein L27, putative [Ricinus communis]
3 Hb_000718_040 0.1320907307 - - PREDICTED: lipase member N [Jatropha curcas]
4 Hb_000152_180 0.1321275666 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
5 Hb_011476_030 0.1362811787 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
6 Hb_000368_120 0.1481795095 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
7 Hb_011114_020 0.1486302182 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
8 Hb_000574_470 0.1489924849 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_005917_020 0.1515802184 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
10 Hb_001519_170 0.1520597075 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
11 Hb_001711_060 0.1549032605 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
12 Hb_003038_100 0.1575430073 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
13 Hb_004545_120 0.165201996 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
14 Hb_023732_050 0.1661167601 - - aldo-keto reductase, putative [Ricinus communis]
15 Hb_009771_060 0.1661903321 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
16 Hb_007426_170 0.1682499672 transcription factor TF Family: TCP -
17 Hb_000312_070 0.1702172092 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001366_350 0.17067553 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
19 Hb_015967_030 0.1720168557 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
20 Hb_169209_010 0.1725761542 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000189_150 Hb_000189_150 Hb_000431_150 Hb_000431_150 Hb_000189_150--Hb_000431_150 Hb_000718_040 Hb_000718_040 Hb_000189_150--Hb_000718_040 Hb_000152_180 Hb_000152_180 Hb_000189_150--Hb_000152_180 Hb_011476_030 Hb_011476_030 Hb_000189_150--Hb_011476_030 Hb_000368_120 Hb_000368_120 Hb_000189_150--Hb_000368_120 Hb_011114_020 Hb_011114_020 Hb_000189_150--Hb_011114_020 Hb_021576_080 Hb_021576_080 Hb_000431_150--Hb_021576_080 Hb_001711_060 Hb_001711_060 Hb_000431_150--Hb_001711_060 Hb_001519_170 Hb_001519_170 Hb_000431_150--Hb_001519_170 Hb_000431_150--Hb_000152_180 Hb_023732_050 Hb_023732_050 Hb_000431_150--Hb_023732_050 Hb_002374_300 Hb_002374_300 Hb_000718_040--Hb_002374_300 Hb_000820_140 Hb_000820_140 Hb_000718_040--Hb_000820_140 Hb_001322_230 Hb_001322_230 Hb_000718_040--Hb_001322_230 Hb_005489_090 Hb_005489_090 Hb_000718_040--Hb_005489_090 Hb_005917_020 Hb_005917_020 Hb_000718_040--Hb_005917_020 Hb_000312_070 Hb_000312_070 Hb_000152_180--Hb_000312_070 Hb_000152_180--Hb_011476_030 Hb_005332_080 Hb_005332_080 Hb_000152_180--Hb_005332_080 Hb_009771_060 Hb_009771_060 Hb_000152_180--Hb_009771_060 Hb_001541_110 Hb_001541_110 Hb_000152_180--Hb_001541_110 Hb_007217_010 Hb_007217_010 Hb_000152_180--Hb_007217_010 Hb_011476_030--Hb_007217_010 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_000212_250 Hb_000212_250 Hb_011476_030--Hb_000212_250 Hb_027445_100 Hb_027445_100 Hb_011476_030--Hb_027445_100 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_011476_030--Hb_005665_090 Hb_000368_120--Hb_011114_020 Hb_003664_030 Hb_003664_030 Hb_000368_120--Hb_003664_030 Hb_001343_020 Hb_001343_020 Hb_000368_120--Hb_001343_020 Hb_000442_070 Hb_000442_070 Hb_000368_120--Hb_000442_070 Hb_000175_050 Hb_000175_050 Hb_000368_120--Hb_000175_050 Hb_003948_020 Hb_003948_020 Hb_000368_120--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_011114_020--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_011114_020--Hb_000005_130 Hb_011114_020--Hb_000442_070 Hb_006620_070 Hb_006620_070 Hb_011114_020--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_011114_020--Hb_000146_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48948 3.58553 17.4809 2.06599 0.790891 0.883507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.52985 5.25441 3.19408 1.95516 12.9906

CAGE analysis