Hb_000189_160

Information

Type -
Description -
Location Contig189: 163411-166749
Sequence    

Annotation

kegg
ID egr:104415433
description GDP-mannose 3,5-epimerase 2
nr
ID XP_010025020.1
description PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
swissprot
ID A3C4S4
description GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1
trembl
ID A0A059B6E3
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04339 PE=4 SV=1
Gene Ontology
ID GO:0005829
description gdp-mannose -epimerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18656: 163420-166868 , PASA_asmbl_18657: 163484-166868
cDNA
(Sanger)
(ID:Location)		 037_L06.ab1: 163534-165531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_160 0.0 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
2 Hb_003224_010 0.0754963624 - - -
3 Hb_000046_430 0.0773015587 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
4 Hb_002503_050 0.0826434948 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_014250_010 0.1057949435 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
6 Hb_002601_140 0.1069748163 - - signal transducer, putative [Ricinus communis]
7 Hb_001135_010 0.1071273405 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
8 Hb_009554_030 0.113864768 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
9 Hb_002078_320 0.1140253298 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
10 Hb_000866_190 0.1158097297 - - transcription factor, putative [Ricinus communis]
11 Hb_000020_020 0.1164694396 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
12 Hb_137272_010 0.117363316 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
13 Hb_010174_180 0.1188756205 - - protein binding protein, putative [Ricinus communis]
14 Hb_000260_750 0.1191947971 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
15 Hb_001266_130 0.1215147191 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
16 Hb_021346_020 0.1232343039 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
17 Hb_000689_010 0.1260578779 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
18 Hb_005496_170 0.1279988834 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
19 Hb_000880_040 0.1311953476 - - -
20 Hb_004162_320 0.1318497724 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_160 Hb_000189_160 Hb_003224_010 Hb_003224_010 Hb_000189_160--Hb_003224_010 Hb_000046_430 Hb_000046_430 Hb_000189_160--Hb_000046_430 Hb_002503_050 Hb_002503_050 Hb_000189_160--Hb_002503_050 Hb_014250_010 Hb_014250_010 Hb_000189_160--Hb_014250_010 Hb_002601_140 Hb_002601_140 Hb_000189_160--Hb_002601_140 Hb_001135_010 Hb_001135_010 Hb_000189_160--Hb_001135_010 Hb_005496_170 Hb_005496_170 Hb_003224_010--Hb_005496_170 Hb_003224_010--Hb_000046_430 Hb_094148_010 Hb_094148_010 Hb_003224_010--Hb_094148_010 Hb_009554_030 Hb_009554_030 Hb_003224_010--Hb_009554_030 Hb_003224_010--Hb_002503_050 Hb_003849_030 Hb_003849_030 Hb_000046_430--Hb_003849_030 Hb_000689_010 Hb_000689_010 Hb_000046_430--Hb_000689_010 Hb_030982_050 Hb_030982_050 Hb_000046_430--Hb_030982_050 Hb_004611_050 Hb_004611_050 Hb_000046_430--Hb_004611_050 Hb_002503_050--Hb_014250_010 Hb_001345_020 Hb_001345_020 Hb_002503_050--Hb_001345_020 Hb_002503_050--Hb_000046_430 Hb_000760_080 Hb_000760_080 Hb_002503_050--Hb_000760_080 Hb_002503_050--Hb_009554_030 Hb_000096_210 Hb_000096_210 Hb_014250_010--Hb_000096_210 Hb_014250_010--Hb_009554_030 Hb_015001_030 Hb_015001_030 Hb_014250_010--Hb_015001_030 Hb_005766_010 Hb_005766_010 Hb_014250_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_014250_010--Hb_000866_190 Hb_001638_150 Hb_001638_150 Hb_014250_010--Hb_001638_150 Hb_002635_020 Hb_002635_020 Hb_002601_140--Hb_002635_020 Hb_000260_750 Hb_000260_750 Hb_002601_140--Hb_000260_750 Hb_002078_320 Hb_002078_320 Hb_002601_140--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_002601_140--Hb_000987_020 Hb_000694_050 Hb_000694_050 Hb_002601_140--Hb_000694_050 Hb_000901_010 Hb_000901_010 Hb_002601_140--Hb_000901_010 Hb_004162_320 Hb_004162_320 Hb_001135_010--Hb_004162_320 Hb_001135_010--Hb_015001_030 Hb_003506_010 Hb_003506_010 Hb_001135_010--Hb_003506_010 Hb_001135_010--Hb_014250_010 Hb_001135_010--Hb_000866_190 Hb_002918_120 Hb_002918_120 Hb_001135_010--Hb_002918_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26543 100.129 271.129 124.186 0.953583 0.261571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29039 1.02894 0.619744 179.707 181.113

CAGE analysis