Hb_000189_180

Information

Type -
Description -
Location Contig189: 180427-181476
Sequence    

Annotation

kegg
ID mdm:103427739
description calmodulin-like
nr
ID XP_012089252.1
description PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
swissprot
ID O23320
description Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=2 SV=1
trembl
ID A0A067JIE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23490 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_180 0.0 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
2 Hb_001958_010 0.0283156381 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
3 Hb_004076_060 0.0532545315 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
4 Hb_000109_140 0.0583790827 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
5 Hb_005731_010 0.0757607958 - - hypothetical protein VITISV_030941 [Vitis vinifera]
6 Hb_004037_040 0.0864775479 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
7 Hb_032572_010 0.0939884428 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
8 Hb_012655_010 0.0993008001 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
9 Hb_000941_110 0.1017511819 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_003894_170 0.1034754211 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
11 Hb_001514_030 0.1053685812 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
12 Hb_127839_010 0.107139619 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
13 Hb_016333_010 0.1086292684 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
14 Hb_001516_010 0.1130978738 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
15 Hb_001079_060 0.1159708741 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
16 Hb_017043_040 0.1161969477 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_111985_100 0.1173169948 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_004122_010 0.1245115365 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
19 Hb_007632_070 0.1255141679 - - kinase, putative [Ricinus communis]
20 Hb_009767_060 0.1272957252 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_180 Hb_000189_180 Hb_001958_010 Hb_001958_010 Hb_000189_180--Hb_001958_010 Hb_004076_060 Hb_004076_060 Hb_000189_180--Hb_004076_060 Hb_000109_140 Hb_000109_140 Hb_000189_180--Hb_000109_140 Hb_005731_010 Hb_005731_010 Hb_000189_180--Hb_005731_010 Hb_004037_040 Hb_004037_040 Hb_000189_180--Hb_004037_040 Hb_032572_010 Hb_032572_010 Hb_000189_180--Hb_032572_010 Hb_001958_010--Hb_004076_060 Hb_001958_010--Hb_032572_010 Hb_001958_010--Hb_005731_010 Hb_001958_010--Hb_000109_140 Hb_000941_110 Hb_000941_110 Hb_001958_010--Hb_000941_110 Hb_004076_060--Hb_005731_010 Hb_012655_010 Hb_012655_010 Hb_004076_060--Hb_012655_010 Hb_004076_060--Hb_000941_110 Hb_004076_060--Hb_000109_140 Hb_000109_140--Hb_005731_010 Hb_000109_140--Hb_012655_010 Hb_003894_170 Hb_003894_170 Hb_000109_140--Hb_003894_170 Hb_005731_010--Hb_012655_010 Hb_005731_010--Hb_000941_110 Hb_001514_030 Hb_001514_030 Hb_004037_040--Hb_001514_030 Hb_001079_060 Hb_001079_060 Hb_004037_040--Hb_001079_060 Hb_004037_040--Hb_001958_010 Hb_016333_010 Hb_016333_010 Hb_004037_040--Hb_016333_010 Hb_168918_010 Hb_168918_010 Hb_004037_040--Hb_168918_010 Hb_027506_030 Hb_027506_030 Hb_032572_010--Hb_027506_030 Hb_009767_060 Hb_009767_060 Hb_032572_010--Hb_009767_060 Hb_085962_010 Hb_085962_010 Hb_032572_010--Hb_085962_010 Hb_000303_060 Hb_000303_060 Hb_032572_010--Hb_000303_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.432493 0.416861 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0872902 0.278823

CAGE analysis