Hb_000189_200

Information

Type -
Description -
Location Contig189: 212293-223507
Sequence    

Annotation

kegg
ID rcu:RCOM_1427480
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID KDP40244.1
description hypothetical protein JCGZ_02242 [Jatropha curcas]
swissprot
ID Q9LY77
description Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1
trembl
ID A0A067L855
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_02242 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18661: 214089-214393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_200 0.0 - - hypothetical protein JCGZ_02242 [Jatropha curcas]
2 Hb_000517_040 0.2113664351 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
3 Hb_005928_040 0.214822735 - - phosphoinositide phosphatase family protein [Populus trichocarpa]
4 Hb_006065_050 0.2175757255 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
5 Hb_011457_070 0.2208653654 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_002173_020 0.2218392093 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
7 Hb_060237_020 0.2235672845 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006634_020 0.2248788781 - - -
9 Hb_008864_040 0.2270839425 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
10 Hb_007803_060 0.2274730672 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
11 Hb_000331_650 0.2306260204 - - PREDICTED: peptide methionine sulfoxide reductase-like [Jatropha curcas]
12 Hb_003203_020 0.2316883183 - - unknown [Lotus japonicus]
13 Hb_002374_280 0.2326226122 - - -
14 Hb_004136_040 0.2344242537 - - putative protein kinase [Arabidopsis thaliana]
15 Hb_005194_030 0.2375562767 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
16 Hb_002000_070 0.2401760984 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
17 Hb_000218_030 0.2406570295 - - -
18 Hb_061411_010 0.2422269644 - - PREDICTED: ATPase WRNIP1 [Jatropha curcas]
19 Hb_000139_200 0.2426058659 - - catalytic, putative [Ricinus communis]
20 Hb_001006_100 0.2441240524 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_200 Hb_000189_200 Hb_000517_040 Hb_000517_040 Hb_000189_200--Hb_000517_040 Hb_005928_040 Hb_005928_040 Hb_000189_200--Hb_005928_040 Hb_006065_050 Hb_006065_050 Hb_000189_200--Hb_006065_050 Hb_011457_070 Hb_011457_070 Hb_000189_200--Hb_011457_070 Hb_002173_020 Hb_002173_020 Hb_000189_200--Hb_002173_020 Hb_060237_020 Hb_060237_020 Hb_000189_200--Hb_060237_020 Hb_000451_070 Hb_000451_070 Hb_000517_040--Hb_000451_070 Hb_006788_140 Hb_006788_140 Hb_000517_040--Hb_006788_140 Hb_189208_020 Hb_189208_020 Hb_000517_040--Hb_189208_020 Hb_000649_240 Hb_000649_240 Hb_000517_040--Hb_000649_240 Hb_000270_440 Hb_000270_440 Hb_000517_040--Hb_000270_440 Hb_088753_010 Hb_088753_010 Hb_000517_040--Hb_088753_010 Hb_001006_100 Hb_001006_100 Hb_005928_040--Hb_001006_100 Hb_000218_020 Hb_000218_020 Hb_005928_040--Hb_000218_020 Hb_000398_020 Hb_000398_020 Hb_005928_040--Hb_000398_020 Hb_001617_040 Hb_001617_040 Hb_005928_040--Hb_001617_040 Hb_002000_070 Hb_002000_070 Hb_005928_040--Hb_002000_070 Hb_005288_170 Hb_005288_170 Hb_005928_040--Hb_005288_170 Hb_002837_060 Hb_002837_060 Hb_006065_050--Hb_002837_060 Hb_001016_050 Hb_001016_050 Hb_006065_050--Hb_001016_050 Hb_010697_040 Hb_010697_040 Hb_006065_050--Hb_010697_040 Hb_011609_140 Hb_011609_140 Hb_006065_050--Hb_011609_140 Hb_005000_320 Hb_005000_320 Hb_006065_050--Hb_005000_320 Hb_004109_230 Hb_004109_230 Hb_006065_050--Hb_004109_230 Hb_004218_030 Hb_004218_030 Hb_011457_070--Hb_004218_030 Hb_004162_090 Hb_004162_090 Hb_011457_070--Hb_004162_090 Hb_025194_040 Hb_025194_040 Hb_011457_070--Hb_025194_040 Hb_009193_120 Hb_009193_120 Hb_011457_070--Hb_009193_120 Hb_005143_030 Hb_005143_030 Hb_011457_070--Hb_005143_030 Hb_009476_040 Hb_009476_040 Hb_011457_070--Hb_009476_040 Hb_000979_240 Hb_000979_240 Hb_002173_020--Hb_000979_240 Hb_000599_130 Hb_000599_130 Hb_002173_020--Hb_000599_130 Hb_104265_030 Hb_104265_030 Hb_002173_020--Hb_104265_030 Hb_065500_030 Hb_065500_030 Hb_002173_020--Hb_065500_030 Hb_003125_030 Hb_003125_030 Hb_002173_020--Hb_003125_030 Hb_001511_110 Hb_001511_110 Hb_002173_020--Hb_001511_110 Hb_008864_040 Hb_008864_040 Hb_060237_020--Hb_008864_040 Hb_000390_100 Hb_000390_100 Hb_060237_020--Hb_000390_100 Hb_000215_100 Hb_000215_100 Hb_060237_020--Hb_000215_100 Hb_060237_020--Hb_002173_020 Hb_000627_180 Hb_000627_180 Hb_060237_020--Hb_000627_180 Hb_001055_030 Hb_001055_030 Hb_060237_020--Hb_001055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.511383 0.409938 0.0363224 0.187401 0.268554 0.074144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241556 0.157327 0.0126245 0.101163 0.211346

CAGE analysis