Hb_000189_250

Information

Type -
Description -
Location Contig189: 249071-249943
Sequence    

Annotation

kegg
ID rcu:RCOM_1427780
description ribose-5-phosphate isomerase, putative (EC:5.3.1.6)
nr
ID XP_012089244.1
description PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9S726
description Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPI3 PE=1 SV=1
trembl
ID A0A067JI71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23484 PE=3 SV=1
Gene Ontology
ID GO:0009535
description probable ribose-5-phosphate isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_250 0.0 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
2 Hb_000934_020 0.0614520208 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
3 Hb_166127_030 0.0928721696 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000640_260 0.1005134099 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_036790_120 0.1008921242 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
6 Hb_007576_150 0.1043858661 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
7 Hb_000495_080 0.106663795 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
8 Hb_000684_280 0.1148397283 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
9 Hb_002671_130 0.1201114763 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
10 Hb_003878_080 0.120649767 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
11 Hb_014361_110 0.1214631798 - - RNA binding protein, putative [Ricinus communis]
12 Hb_000352_220 0.1222802368 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_000069_490 0.1240010341 - - conserved hypothetical protein [Ricinus communis]
14 Hb_021409_190 0.1243228167 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
15 Hb_001890_010 0.1251292829 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
16 Hb_003124_120 0.1251338875 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
17 Hb_000661_090 0.1278956419 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_158144_020 0.1280132123 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
19 Hb_000189_520 0.1327542277 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
20 Hb_003029_140 0.1345450434 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000189_250 Hb_000189_250 Hb_000934_020 Hb_000934_020 Hb_000189_250--Hb_000934_020 Hb_166127_030 Hb_166127_030 Hb_000189_250--Hb_166127_030 Hb_000640_260 Hb_000640_260 Hb_000189_250--Hb_000640_260 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_007576_150 Hb_007576_150 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_000934_020--Hb_007576_150 Hb_000934_020--Hb_000640_260 Hb_001890_010 Hb_001890_010 Hb_000934_020--Hb_001890_010 Hb_000934_020--Hb_166127_030 Hb_000069_490 Hb_000069_490 Hb_000934_020--Hb_000069_490 Hb_166127_030--Hb_000640_260 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_021409_190 Hb_021409_190 Hb_166127_030--Hb_021409_190 Hb_000640_260--Hb_001890_010 Hb_000640_260--Hb_021409_190 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020 Hb_007576_150--Hb_000640_260 Hb_007576_150--Hb_003029_140 Hb_007576_150--Hb_001890_010 Hb_003878_080 Hb_003878_080 Hb_007576_150--Hb_003878_080 Hb_000352_220 Hb_000352_220 Hb_000495_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000495_080--Hb_003226_190 Hb_008511_140 Hb_008511_140 Hb_000495_080--Hb_008511_140 Hb_007002_010 Hb_007002_010 Hb_000495_080--Hb_007002_010 Hb_000495_080--Hb_000640_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8963 16.7238 34.4418 16.5726 8.63302 10.0025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4744 15.0537 18.7218 20.2152 135.852

CAGE analysis