Hb_000189_260

Information

Type -
Description -
Location Contig189: 252056-253841
Sequence    

Annotation

kegg
ID rcu:RCOM_1427790
description hypothetical protein
nr
ID XP_002512224.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REQ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1427790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18665: 252010-253197 , PASA_asmbl_18666: 252821-253004 , PASA_asmbl_18667: 253219-253733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020332_040 0.0683610002 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
3 Hb_002917_010 0.085251025 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
4 Hb_000976_020 0.0859954143 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
5 Hb_012660_010 0.0868215661 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
6 Hb_001357_260 0.0991596266 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_002048_010 0.1025511183 - - unknown [Lotus japonicus]
8 Hb_000281_200 0.1069169204 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
9 Hb_001288_010 0.1083425308 - - -
10 Hb_000135_050 0.1090951894 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
11 Hb_112082_030 0.1095010808 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_011486_030 0.1101710786 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
13 Hb_107258_010 0.1132698477 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
14 Hb_001442_080 0.1136702926 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
15 Hb_001863_290 0.1139327263 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
16 Hb_004463_040 0.1153428215 - - -
17 Hb_000648_120 0.1155826957 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
18 Hb_146023_010 0.1157349297 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000245_140 0.1173357108 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
20 Hb_002965_020 0.1175010075 - - hypothetical protein JCGZ_18947 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_260 Hb_000189_260 Hb_020332_040 Hb_020332_040 Hb_000189_260--Hb_020332_040 Hb_002917_010 Hb_002917_010 Hb_000189_260--Hb_002917_010 Hb_000976_020 Hb_000976_020 Hb_000189_260--Hb_000976_020 Hb_012660_010 Hb_012660_010 Hb_000189_260--Hb_012660_010 Hb_001357_260 Hb_001357_260 Hb_000189_260--Hb_001357_260 Hb_002048_010 Hb_002048_010 Hb_000189_260--Hb_002048_010 Hb_020332_040--Hb_012660_010 Hb_020332_040--Hb_002048_010 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010 Hb_020332_040--Hb_000976_020 Hb_002917_010--Hb_001357_260 Hb_002917_010--Hb_000976_020 Hb_002965_020 Hb_002965_020 Hb_002917_010--Hb_002965_020 Hb_146023_010 Hb_146023_010 Hb_002917_010--Hb_146023_010 Hb_064398_010 Hb_064398_010 Hb_002917_010--Hb_064398_010 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_001357_260 Hb_000976_020--Hb_002965_020 Hb_107258_010 Hb_107258_010 Hb_012660_010--Hb_107258_010 Hb_012660_010--Hb_011486_030 Hb_001288_010 Hb_001288_010 Hb_012660_010--Hb_001288_010 Hb_001863_290 Hb_001863_290 Hb_012660_010--Hb_001863_290 Hb_000301_030 Hb_000301_030 Hb_012660_010--Hb_000301_030 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_001357_260--Hb_002965_020 Hb_004586_080 Hb_004586_080 Hb_001357_260--Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_001357_260--Hb_000327_300 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_002048_010--Hb_002965_020 Hb_004463_040 Hb_004463_040 Hb_002048_010--Hb_004463_040 Hb_002048_010--Hb_000976_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0354478 3.45491 0.522719 1.18306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163764 0.128739 0.114744 25.7287 1.01738

CAGE analysis