Hb_000189_270

Information

Type -
Description -
Location Contig189: 259434-259976
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05340g
description hypothetical protein
nr
ID XP_012089243.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
swissprot
ID Q9LNQ1
description Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1
trembl
ID A0A067JVV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23482 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim23-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18668: 259034-260185
cDNA
(Sanger)
(ID:Location)		 013_F09.ab1: 259416-260114 , 032_L02.ab1: 259473-260152 , 044_G06.ab1: 259428-260152

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_270 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
2 Hb_004645_050 0.0673820325 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
3 Hb_002311_350 0.0727598379 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
4 Hb_000380_190 0.0848292554 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
5 Hb_001512_070 0.0877582965 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
6 Hb_000977_080 0.0918318286 - - type II inositol 5-phosphatase, putative [Ricinus communis]
7 Hb_002374_490 0.0929192052 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000531_020 0.0937664652 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
9 Hb_001235_210 0.096219299 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_002307_030 0.0986302706 - - 40S ribosomal protein S15D [Hevea brasiliensis]
11 Hb_028486_040 0.1046937196 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_002375_090 0.1052562775 - - -
13 Hb_007101_150 0.1065344506 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
14 Hb_001828_090 0.1067366023 - - prohibitin, putative [Ricinus communis]
15 Hb_001946_210 0.1071522197 - - ribosomal protein l7ae, putative [Ricinus communis]
16 Hb_003551_020 0.1072410558 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
17 Hb_001442_020 0.1076533747 - - unknown [Populus trichocarpa]
18 Hb_002811_230 0.1089022581 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
19 Hb_003018_200 0.1107292811 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
20 Hb_007747_090 0.1114905585 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_000189_270 Hb_000189_270 Hb_004645_050 Hb_004645_050 Hb_000189_270--Hb_004645_050 Hb_002311_350 Hb_002311_350 Hb_000189_270--Hb_002311_350 Hb_000380_190 Hb_000380_190 Hb_000189_270--Hb_000380_190 Hb_001512_070 Hb_001512_070 Hb_000189_270--Hb_001512_070 Hb_000977_080 Hb_000977_080 Hb_000189_270--Hb_000977_080 Hb_002374_490 Hb_002374_490 Hb_000189_270--Hb_002374_490 Hb_004645_050--Hb_000977_080 Hb_001235_210 Hb_001235_210 Hb_004645_050--Hb_001235_210 Hb_004645_050--Hb_002311_350 Hb_000531_020 Hb_000531_020 Hb_004645_050--Hb_000531_020 Hb_002307_030 Hb_002307_030 Hb_004645_050--Hb_002307_030 Hb_002311_350--Hb_000380_190 Hb_001477_110 Hb_001477_110 Hb_002311_350--Hb_001477_110 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_001824_070 Hb_001824_070 Hb_002311_350--Hb_001824_070 Hb_000380_190--Hb_001477_110 Hb_000007_100 Hb_000007_100 Hb_000380_190--Hb_000007_100 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070 Hb_003939_080 Hb_003939_080 Hb_001512_070--Hb_003939_080 Hb_007101_150 Hb_007101_150 Hb_001512_070--Hb_007101_150 Hb_001828_090 Hb_001828_090 Hb_001512_070--Hb_001828_090 Hb_012762_050 Hb_012762_050 Hb_001512_070--Hb_012762_050 Hb_002868_010 Hb_002868_010 Hb_001512_070--Hb_002868_010 Hb_000684_090 Hb_000684_090 Hb_001512_070--Hb_000684_090 Hb_000392_270 Hb_000392_270 Hb_000977_080--Hb_000392_270 Hb_003551_020 Hb_003551_020 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_002374_490--Hb_002307_030 Hb_004297_100 Hb_004297_100 Hb_002374_490--Hb_004297_100 Hb_024835_030 Hb_024835_030 Hb_002374_490--Hb_024835_030 Hb_002374_490--Hb_004645_050 Hb_007747_090 Hb_007747_090 Hb_002374_490--Hb_007747_090 Hb_000156_130 Hb_000156_130 Hb_002374_490--Hb_000156_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.8628 25.4763 9.4091 14.9164 52.6199 49.3171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.1551 100.893 42.7723 16.8979 8.08207

CAGE analysis