Hb_000189_310

Information

Type -
Description -
Location Contig189: 297911-304976
Sequence    

Annotation

kegg
ID rcu:RCOM_1427830
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012089239.1
description PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
swissprot
ID Q2QMH1
description Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. japonica GN=NEK2 PE=2 SV=1
trembl
ID B9REQ9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1427830 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase nek2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18672: 297925-304358 , PASA_asmbl_18673: 300631-300883
cDNA
(Sanger)
(ID:Location)		 041_I05.ab1: 297925-301304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_310 0.0 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
2 Hb_001616_080 0.0908416106 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
3 Hb_003069_010 0.1170128377 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
4 Hb_012725_070 0.1185428204 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
5 Hb_000072_070 0.1223968975 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
6 Hb_011013_010 0.1306280457 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_011316_100 0.1345436358 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
8 Hb_000563_210 0.1347538376 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
9 Hb_027043_020 0.135030828 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001811_140 0.1355566975 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
11 Hb_000003_600 0.13574422 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
12 Hb_004531_070 0.1359396918 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
13 Hb_000299_040 0.1359941605 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
14 Hb_000676_050 0.138469775 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
15 Hb_004705_040 0.1385632536 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
16 Hb_012627_050 0.1401879572 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_005186_050 0.1409113303 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
18 Hb_000990_080 0.1454297853 - - gulonolactone oxidase, putative [Ricinus communis]
19 Hb_000141_250 0.1469288136 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
20 Hb_005288_150 0.1471640177 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_310 Hb_000189_310 Hb_001616_080 Hb_001616_080 Hb_000189_310--Hb_001616_080 Hb_003069_010 Hb_003069_010 Hb_000189_310--Hb_003069_010 Hb_012725_070 Hb_012725_070 Hb_000189_310--Hb_012725_070 Hb_000072_070 Hb_000072_070 Hb_000189_310--Hb_000072_070 Hb_011013_010 Hb_011013_010 Hb_000189_310--Hb_011013_010 Hb_011316_100 Hb_011316_100 Hb_000189_310--Hb_011316_100 Hb_014720_160 Hb_014720_160 Hb_001616_080--Hb_014720_160 Hb_000922_330 Hb_000922_330 Hb_001616_080--Hb_000922_330 Hb_001616_080--Hb_003069_010 Hb_001357_090 Hb_001357_090 Hb_001616_080--Hb_001357_090 Hb_012627_050 Hb_012627_050 Hb_001616_080--Hb_012627_050 Hb_005186_050 Hb_005186_050 Hb_003069_010--Hb_005186_050 Hb_010661_030 Hb_010661_030 Hb_003069_010--Hb_010661_030 Hb_003607_150 Hb_003607_150 Hb_003069_010--Hb_003607_150 Hb_003069_010--Hb_012627_050 Hb_007154_020 Hb_007154_020 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070 Hb_000141_250 Hb_000141_250 Hb_012725_070--Hb_000141_250 Hb_005288_150 Hb_005288_150 Hb_012725_070--Hb_005288_150 Hb_006817_010 Hb_006817_010 Hb_012725_070--Hb_006817_010 Hb_000808_050 Hb_000808_050 Hb_012725_070--Hb_000808_050 Hb_012725_070--Hb_011013_010 Hb_000260_100 Hb_000260_100 Hb_012725_070--Hb_000260_100 Hb_000072_070--Hb_011316_100 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_008062_040 Hb_008062_040 Hb_000072_070--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_000072_070--Hb_001085_050 Hb_000575_030 Hb_000575_030 Hb_000072_070--Hb_000575_030 Hb_000661_140 Hb_000661_140 Hb_011013_010--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_011013_010--Hb_002639_150 Hb_011013_010--Hb_005288_150 Hb_001373_110 Hb_001373_110 Hb_011013_010--Hb_001373_110 Hb_011013_010--Hb_004531_070 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_002183_070 Hb_002183_070 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44688 0.391404 4.85696 1.58008 3.34742 4.29014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.5666 3.25266 2.61372 1.04636 1.67566

CAGE analysis