Hb_000189_330

Information

Type -
Description -
Location Contig189: 314155-320261
Sequence    

Annotation

kegg
ID rcu:RCOM_1427860
description hypothetical protein
nr
ID XP_012089234.1
description PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
swissprot
ID Q6TGY8
description ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2 SV=1
trembl
ID A0A067JVU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23477 PE=4 SV=1
Gene Ontology
ID GO:0016740
description er membrane protein complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18678: 314271-318951 , PASA_asmbl_18679: 314271-320247 , PASA_asmbl_18680: 317421-317691
cDNA
(Sanger)
(ID:Location)		 053_M03.ab1: 314271-318582

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_330 0.0 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
2 Hb_001621_170 0.0603603126 - - protein binding protein, putative [Ricinus communis]
3 Hb_003813_040 0.0636514568 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
4 Hb_001377_320 0.0779797457 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
5 Hb_001418_040 0.0795341051 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
6 Hb_001143_180 0.0815320784 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
7 Hb_000395_020 0.0817100686 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
8 Hb_003878_110 0.0819149277 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
9 Hb_006824_060 0.0855792722 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
10 Hb_000416_050 0.086108078 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
11 Hb_000868_060 0.0865928428 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
12 Hb_007044_040 0.0872163311 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
13 Hb_028308_010 0.0879220548 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
14 Hb_000351_120 0.0884885399 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
15 Hb_000368_020 0.0897347094 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
16 Hb_011609_080 0.0900594914 - - uv excision repair protein rad23, putative [Ricinus communis]
17 Hb_005288_150 0.0916926603 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
18 Hb_008556_030 0.0922736786 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
19 Hb_000498_010 0.093225572 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000777_050 0.0940562578 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]

Gene co-expression network

sample Hb_000189_330 Hb_000189_330 Hb_001621_170 Hb_001621_170 Hb_000189_330--Hb_001621_170 Hb_003813_040 Hb_003813_040 Hb_000189_330--Hb_003813_040 Hb_001377_320 Hb_001377_320 Hb_000189_330--Hb_001377_320 Hb_001418_040 Hb_001418_040 Hb_000189_330--Hb_001418_040 Hb_001143_180 Hb_001143_180 Hb_000189_330--Hb_001143_180 Hb_000395_020 Hb_000395_020 Hb_000189_330--Hb_000395_020 Hb_003020_010 Hb_003020_010 Hb_001621_170--Hb_003020_010 Hb_016461_010 Hb_016461_010 Hb_001621_170--Hb_016461_010 Hb_011609_080 Hb_011609_080 Hb_001621_170--Hb_011609_080 Hb_001621_170--Hb_000395_020 Hb_000390_180 Hb_000390_180 Hb_001621_170--Hb_000390_180 Hb_003813_040--Hb_001377_320 Hb_007592_030 Hb_007592_030 Hb_003813_040--Hb_007592_030 Hb_002686_250 Hb_002686_250 Hb_003813_040--Hb_002686_250 Hb_002078_020 Hb_002078_020 Hb_003813_040--Hb_002078_020 Hb_000777_050 Hb_000777_050 Hb_003813_040--Hb_000777_050 Hb_002022_060 Hb_002022_060 Hb_001377_320--Hb_002022_060 Hb_007904_120 Hb_007904_120 Hb_001377_320--Hb_007904_120 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_008556_030 Hb_008556_030 Hb_001418_040--Hb_008556_030 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_000576_050 Hb_000576_050 Hb_001418_040--Hb_000576_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_000414_050 Hb_000414_050 Hb_001418_040--Hb_000414_050 Hb_002836_140 Hb_002836_140 Hb_001418_040--Hb_002836_140 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_006816_050 Hb_006816_050 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090 Hb_000868_060 Hb_000868_060 Hb_000395_020--Hb_000868_060 Hb_000523_050 Hb_000523_050 Hb_000395_020--Hb_000523_050 Hb_001040_040 Hb_001040_040 Hb_000395_020--Hb_001040_040 Hb_000395_020--Hb_003813_040 Hb_001050_010 Hb_001050_010 Hb_000395_020--Hb_001050_010 Hb_000395_020--Hb_002078_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.6192 22.9611 46.0894 26.1171 46.9714 48.473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4451 19.4858 18.9036 23.4814 19.5928

CAGE analysis