Hb_000189_340

Information

Type -
Description -
Location Contig189: 321381-323732
Sequence    

Annotation

kegg
ID rcu:RCOM_1427870
description 40S ribosomal protein S3a, putative
nr
ID XP_012089233.1
description PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
swissprot
ID A5B4K1
description 40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1
trembl
ID A0A067JLE1
description 40S ribosomal protein S3a OS=Jatropha curcas GN=JCGZ_23476 PE=3 SV=1
Gene Ontology
ID GO:0022627
description 40s ribosomal protein s3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18682: 321425-323744 , PASA_asmbl_18683: 324488-328908
cDNA
(Sanger)
(ID:Location)		 003_O06.ab1: 321736-323744 , 020_H04.ab1: 321693-323740 , 034_F09.ab1: 321733-323744 , 040_B19.ab1: 321999-323744 , 044_N06.ab1: 322050-323744 , 047_L20.ab1: 322007-323743 , 053_P18.ab1: 321970-323744

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_340 0.0 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
2 Hb_001766_150 0.057509276 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
3 Hb_001047_100 0.0629016872 - - 40S ribosomal protein S18, putative [Ricinus communis]
4 Hb_105386_010 0.0666982353 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_001358_030 0.0677897012 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
6 Hb_009222_010 0.0687151055 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_142439_010 0.0695285586 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
8 Hb_003849_060 0.0774508058 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
9 Hb_005618_160 0.0778288004 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
10 Hb_001430_120 0.0814812214 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
11 Hb_002391_300 0.082509705 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
12 Hb_000093_160 0.0830694833 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
13 Hb_031939_010 0.0840494154 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_001405_120 0.0849840842 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
15 Hb_029921_040 0.0852644972 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003010_030 0.085336709 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_000462_140 0.0864848732 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
18 Hb_011942_080 0.0866438657 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
19 Hb_000174_110 0.0866551817 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_010691_060 0.0869624023 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_340 Hb_000189_340 Hb_001766_150 Hb_001766_150 Hb_000189_340--Hb_001766_150 Hb_001047_100 Hb_001047_100 Hb_000189_340--Hb_001047_100 Hb_105386_010 Hb_105386_010 Hb_000189_340--Hb_105386_010 Hb_001358_030 Hb_001358_030 Hb_000189_340--Hb_001358_030 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010 Hb_010691_060 Hb_010691_060 Hb_001766_150--Hb_010691_060 Hb_001766_150--Hb_001047_100 Hb_003044_100 Hb_003044_100 Hb_001766_150--Hb_003044_100 Hb_000157_030 Hb_000157_030 Hb_001766_150--Hb_000157_030 Hb_001766_150--Hb_105386_010 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_001047_100--Hb_000290_020 Hb_001047_100--Hb_001358_030 Hb_105386_010--Hb_001358_030 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_105386_010--Hb_003746_040 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_000059_140 Hb_000059_140 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_003467_010 Hb_003467_010 Hb_009222_010--Hb_003467_010 Hb_005914_060 Hb_005914_060 Hb_142439_010--Hb_005914_060 Hb_001430_120 Hb_001430_120 Hb_142439_010--Hb_001430_120 Hb_003952_070 Hb_003952_070 Hb_142439_010--Hb_003952_070 Hb_000008_330 Hb_000008_330 Hb_142439_010--Hb_000008_330 Hb_075481_030 Hb_075481_030 Hb_142439_010--Hb_075481_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
310.673 181.552 195.743 139.464 350.704 477.351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
256.034 370.98 135.348 177.485 111.364

CAGE analysis