Hb_000189_360

Information

Type -
Description -
Location Contig189: 332174-337411
Sequence    

Annotation

kegg
ID cit:102611166
description calcium-transporting ATPase 12, plasma membrane-type-like
nr
ID XP_010102299.1
description Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
swissprot
ID Q9M2L4
description Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=1 SV=1
trembl
ID W9RI68
description Calcium-transporting ATPase OS=Morus notabilis GN=L484_024586 PE=3 SV=1
Gene Ontology
ID GO:0016020
description calcium-transporting atpase plasma membrane-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_360 0.0 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
2 Hb_114839_010 0.1942450438 - - -
3 Hb_007451_060 0.2287383038 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
4 Hb_003992_110 0.2317273104 - - hypothetical protein VITISV_016971 [Vitis vinifera]
5 Hb_009139_010 0.2327452199 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
6 Hb_000713_020 0.2350344435 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000179_150 0.2617002748 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
8 Hb_141383_010 0.2868697111 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_004732_010 0.2933030004 - - -
10 Hb_000529_240 0.2978084285 - - -
11 Hb_001495_060 0.305294295 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
12 Hb_133311_010 0.307538667 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
13 Hb_008667_050 0.3154371442 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
14 Hb_004204_090 0.3163454139 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
15 Hb_001369_260 0.3185029515 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_000086_330 0.3346310168 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
17 Hb_115784_010 0.334922075 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_001143_010 0.3372781173 - - -
19 Hb_002471_170 0.339414759 - - -
20 Hb_001047_140 0.3405443732 - - -

Gene co-expression network

sample Hb_000189_360 Hb_000189_360 Hb_114839_010 Hb_114839_010 Hb_000189_360--Hb_114839_010 Hb_007451_060 Hb_007451_060 Hb_000189_360--Hb_007451_060 Hb_003992_110 Hb_003992_110 Hb_000189_360--Hb_003992_110 Hb_009139_010 Hb_009139_010 Hb_000189_360--Hb_009139_010 Hb_000713_020 Hb_000713_020 Hb_000189_360--Hb_000713_020 Hb_000179_150 Hb_000179_150 Hb_000189_360--Hb_000179_150 Hb_000086_330 Hb_000086_330 Hb_114839_010--Hb_000086_330 Hb_000931_030 Hb_000931_030 Hb_114839_010--Hb_000931_030 Hb_042404_010 Hb_042404_010 Hb_114839_010--Hb_042404_010 Hb_004098_030 Hb_004098_030 Hb_114839_010--Hb_004098_030 Hb_070820_010 Hb_070820_010 Hb_114839_010--Hb_070820_010 Hb_007451_060--Hb_003992_110 Hb_170207_010 Hb_170207_010 Hb_007451_060--Hb_170207_010 Hb_141383_010 Hb_141383_010 Hb_007451_060--Hb_141383_010 Hb_000529_240 Hb_000529_240 Hb_007451_060--Hb_000529_240 Hb_000829_080 Hb_000829_080 Hb_007451_060--Hb_000829_080 Hb_001369_260 Hb_001369_260 Hb_003992_110--Hb_001369_260 Hb_145890_010 Hb_145890_010 Hb_003992_110--Hb_145890_010 Hb_002741_030 Hb_002741_030 Hb_003992_110--Hb_002741_030 Hb_003992_110--Hb_000179_150 Hb_008667_050 Hb_008667_050 Hb_009139_010--Hb_008667_050 Hb_009139_010--Hb_000179_150 Hb_001047_140 Hb_001047_140 Hb_009139_010--Hb_001047_140 Hb_009139_010--Hb_000529_240 Hb_001495_060 Hb_001495_060 Hb_009139_010--Hb_001495_060 Hb_000713_020--Hb_000179_150 Hb_133311_010 Hb_133311_010 Hb_000713_020--Hb_133311_010 Hb_084889_010 Hb_084889_010 Hb_000713_020--Hb_084889_010 Hb_011242_030 Hb_011242_030 Hb_000713_020--Hb_011242_030 Hb_000713_020--Hb_114839_010 Hb_000179_150--Hb_084889_010 Hb_000179_150--Hb_133311_010 Hb_109578_010 Hb_109578_010 Hb_000179_150--Hb_109578_010 Hb_000179_150--Hb_001495_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00791127 0.0130386 0 0 0 0.00691601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0179569 0.01413 0 0 0

CAGE analysis